Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C7M24_RS12455 Genome accession   NZ_CP028210
Coordinates   2603214..2603549 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102746     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2598214..2608549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M24_RS12435 (C7M24_02504) gcvT 2598820..2599920 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  C7M24_RS12440 (C7M24_02505) - 2600344..2602014 (+) 1671 WP_124934996.1 DEAD/DEAH box helicase -
  C7M24_RS12445 (C7M24_02506) - 2602036..2602830 (+) 795 WP_076424968.1 YqhG family protein -
  C7M24_RS12450 (C7M24_02507) sinI 2603007..2603180 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  C7M24_RS12455 (C7M24_02508) sinR 2603214..2603549 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  C7M24_RS12460 (C7M24_02509) tasA 2603597..2604382 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  C7M24_RS12465 (C7M24_02510) sipW 2604447..2605031 (-) 585 WP_160223172.1 signal peptidase I SipW -
  C7M24_RS12470 (C7M24_02511) tapA 2605003..2605674 (-) 672 WP_160223173.1 amyloid fiber anchoring/assembly protein TapA -
  C7M24_RS12475 (C7M24_02512) - 2605933..2606262 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  C7M24_RS12480 (C7M24_02513) - 2606302..2606481 (-) 180 WP_160223174.1 YqzE family protein -
  C7M24_RS12485 (C7M24_02514) comGG 2606538..2606915 (-) 378 WP_160223175.1 competence type IV pilus minor pilin ComGG Machinery gene
  C7M24_RS12490 (C7M24_02515) comGF 2606916..2607416 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  C7M24_RS12495 (C7M24_02516) comGE 2607325..2607639 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  C7M24_RS12500 (C7M24_02517) comGD 2607623..2608060 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  C7M24_RS12505 (C7M24_02518) comGC 2608050..2608316 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=282960 C7M24_RS12455 WP_003153104.1 2603214..2603549(+) (sinR) [Bacillus velezensis strain SRCM102746]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=282960 C7M24_RS12455 WP_003153104.1 2603214..2603549(+) (sinR) [Bacillus velezensis strain SRCM102746]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment