Detailed information NTG0282776

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D9Y32_RS20235
• Genome accession: NZ_CP033218
• Coordinates: 3887659..3888789 (-)
• Length: 376 a.a.
• NCBI ID: WP_142782715.1
• Uniprot ID: -
• Organism: Bacillus licheniformis strain TCCC 11148
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3882659..3893789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9Y32_RS20215 (D9Y32_20240)	-	3883845..3884189 (-)	345	WP_003183123.1	hypothetical protein	-
D9Y32_RS23785	-	3884452..3885465 (-)	1014	WP_260677300.1	T4 RnlA family RNA ligase	-
D9Y32_RS23790	-	3885505..3886641 (-)	1137	WP_260677301.1	AAA family ATPase	-
D9Y32_RS20225 (D9Y32_20250)	-	3886768..3887205 (-)	438	WP_011198085.1	Hsp20/alpha crystallin family protein	-
D9Y32_RS20230 (D9Y32_20255)	-	3887364..3887669 (-)	306	WP_003183128.1	hypothetical protein	-
D9Y32_RS20235 (D9Y32_20260)	rapC	3887659..3888789 (-)	1131	WP_142782715.1	Rap family tetratricopeptide repeat protein	Regulator
D9Y32_RS20240 (D9Y32_20265)	-	3889021..3889458 (-)	438	WP_003183133.1	peptidylprolyl isomerase	-
D9Y32_RS20245 (D9Y32_20270)	-	3889588..3890691 (+)	1104	WP_003183136.1	DUF1002 domain-containing protein	-
D9Y32_RS20250 (D9Y32_20275)	-	3890674..3891549 (-)	876	WP_142782716.1	poly-gamma-glutamate hydrolase family protein	-
D9Y32_RS20255 (D9Y32_20280)	lysA	3891788..3893107 (-)	1320	WP_142782717.1	diaminopimelate decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44306.19 Da
• Isoelectric Point: 4.7199

>NTDB_id=282776 D9Y32_RS20235 WP_142782715.1 3887659..3888789(-) (rapC) [Bacillus licheniformis strain TCCC 11148]
MSVKIPSTAVGVKINDWYNAIRKFNVTDAEMLKAEIEREISQMEEDQDLLLYYALMEFRHRIMLDYVKPLEEVETPPDFS
EILKDIEDEQGKLTGLLEYYFNFFRGMYEYKNHDYIKAISFYRRAEKKLLHVEDEIERAEFHFKMAEVFYHMKQSHVSMN
YALQAIETYQAHETYTVRRIQCEFVIAGNYDDLESNEKALSHLEKALKLSQQEGQLILEGHTYYNLGNCYYKMGDFDQAA
EYFNRAAAIYQEESSDILPKAFFSLALAYFKLKQLEKADDALNKGIDIARRSDDAIYLSKFHFLKALYVDDDGRAPMLET
FQLLGSKKMYPDIEDLALEAAEYYNEIGRLSDSVYFYQTVFSARKQMKKGDWSYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=282776 D9Y32_RS20235 WP_142782715.1 3887659..3888789(-) (rapC) [Bacillus licheniformis strain TCCC 11148]
GTGAGCGTAAAAATCCCATCGACGGCAGTCGGCGTAAAAATTAATGACTGGTATAACGCGATACGTAAATTCAACGTCAC
GGACGCCGAAATGCTGAAGGCAGAAATTGAGCGCGAAATTTCTCAAATGGAAGAGGATCAAGACTTATTATTGTATTACG
CCTTAATGGAATTCAGACACAGAATCATGCTTGATTACGTAAAACCTTTGGAAGAAGTCGAAACCCCGCCTGACTTTTCT
GAAATATTAAAAGATATCGAAGATGAACAAGGAAAGCTGACAGGCCTGCTCGAATATTATTTTAACTTTTTTAGAGGGAT
GTATGAATATAAAAACCATGATTATATTAAAGCGATCTCTTTTTACAGGCGCGCCGAAAAAAAGCTGCTGCACGTCGAGG
ACGAAATAGAGAGAGCCGAGTTTCATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAGAGCCATGTGTCGATGAAC
TATGCGCTTCAAGCGATTGAAACCTATCAGGCGCATGAAACCTACACGGTTCGGAGAATCCAATGCGAGTTCGTCATCGC
AGGGAACTATGACGATTTAGAGTCGAATGAAAAAGCGCTGTCACATCTTGAAAAGGCGCTGAAGCTTTCACAGCAAGAAG
GCCAGCTCATATTGGAAGGACACACCTATTACAATTTGGGAAACTGCTATTATAAGATGGGGGATTTCGATCAGGCAGCC
GAGTACTTCAACAGGGCTGCTGCGATTTATCAAGAAGAGTCATCAGATATTCTTCCAAAAGCGTTTTTCAGTCTTGCACT
TGCATATTTCAAGTTGAAGCAGCTGGAAAAGGCGGATGACGCGTTAAACAAAGGAATTGACATCGCCCGCCGATCAGACG
ATGCGATCTACCTTTCAAAATTTCATTTTTTAAAAGCTTTGTATGTTGATGATGACGGCAGGGCTCCAATGCTGGAGACA
TTTCAGCTGCTCGGGTCAAAAAAGATGTATCCCGATATTGAGGACTTGGCATTGGAAGCAGCTGAATACTATAATGAAAT
TGGGCGCTTGAGCGACTCTGTTTATTTCTATCAAACGGTATTCAGTGCTCGAAAACAAATGAAAAAAGGGGACTGGTCGT
ATGAAATCTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (260-290)

• Tetratricopeptide repeat (TPR_12) (190-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	47.745	100	0.479
rapF	Bacillus subtilis subsp. subtilis str. 168	44.619	100	0.452