Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C7M22_RS04405 Genome accession   NZ_CP028208
Coordinates   856803..858188 (-) Length   461 a.a.
NCBI ID   WP_160223300.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102744     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 851803..863188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M22_RS04370 (C7M22_00878) flgL 851978..852895 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  C7M22_RS04375 (C7M22_00879) flgK 852907..854424 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  C7M22_RS04380 (C7M22_00880) - 854440..854922 (-) 483 WP_003151394.1 flagellar protein FlgN -
  C7M22_RS04385 (C7M22_00881) flgM 854937..855203 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M22_RS04390 (C7M22_00882) - 855273..855692 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M22_RS04395 comFC 855766..856455 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M22_RS04400 (C7M22_00884) - 856461..856745 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M22_RS04405 (C7M22_00885) comFA 856803..858188 (-) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M22_RS04410 (C7M22_00886) - 858297..859145 (-) 849 WP_003151387.1 DegV family protein -
  C7M22_RS04415 (C7M22_00887) degU 859243..859932 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M22_RS04420 (C7M22_00888) degS 860009..861172 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M22_RS04425 (C7M22_00889) - 861395..862042 (+) 648 WP_061581228.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52690.00 Da        Isoelectric Point: 10.2276

>NTDB_id=282775 C7M22_RS04405 WP_160223300.1 856803..858188(-) (comFA) [Bacillus velezensis strain SRCM102744]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTSLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEANLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=282775 C7M22_RS04405 WP_160223300.1 856803..858188(-) (comFA) [Bacillus velezensis strain SRCM102744]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTTCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCAATTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment