Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M22_RS02450 Genome accession   NZ_CP028208
Coordinates   470255..470899 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SRCM102744     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 465255..475899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M22_RS02415 (C7M22_00486) - 466440..466871 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  C7M22_RS02420 (C7M22_00487) - 466871..467212 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  C7M22_RS02425 (C7M22_00488) - 467205..468686 (+) 1482 WP_080130026.1 Na+/H+ antiporter subunit D -
  C7M22_RS02430 (C7M22_00489) - 468692..469168 (+) 477 WP_160223245.1 Na+/H+ antiporter subunit E -
  C7M22_RS02435 (C7M22_00490) - 469168..469452 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  C7M22_RS02440 (C7M22_00491) mnhG 469436..469810 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  C7M22_RS02445 (C7M22_00492) - 469850..470233 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  C7M22_RS02450 (C7M22_00493) comA 470255..470899 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  C7M22_RS02455 (C7M22_00494) comP 470980..473271 (-) 2292 WP_160223246.1 histidine kinase Regulator
  C7M22_RS02460 (C7M22_00495) comX 473283..473447 (-) 165 WP_061581461.1 competence pheromone ComX -
  C7M22_RS02465 (C7M22_00496) - 473447..474358 (-) 912 WP_081111611.1 polyprenyl synthetase family protein -
  C7M22_RS02470 (C7M22_00497) degQ 474510..474650 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  C7M22_RS02475 (C7M22_00498) - 475115..475456 (+) 342 WP_069006914.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=282769 C7M22_RS02450 WP_003152052.1 470255..470899(-) (comA) [Bacillus velezensis strain SRCM102744]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=282769 C7M22_RS02450 WP_003152052.1 470255..470899(-) (comA) [Bacillus velezensis strain SRCM102744]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment