Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D9Y32_RS19265 Genome accession   NZ_CP033218
Coordinates   3714050..3714532 (-) Length   160 a.a.
NCBI ID   WP_009328420.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3709050..3719532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS19230 (D9Y32_19255) - 3709219..3709605 (+) 387 WP_021837858.1 hypothetical protein -
  D9Y32_RS19235 (D9Y32_19260) - 3709624..3709878 (+) 255 WP_009328416.1 phage holin -
  D9Y32_RS19240 (D9Y32_19265) - 3709897..3710196 (+) 300 WP_034291560.1 hypothetical protein -
  D9Y32_RS23775 (D9Y32_19270) - 3710404..3710481 (+) 78 WP_003180750.1 putative holin-like toxin -
  D9Y32_RS23780 - 3710884..3711012 (-) 129 WP_256692922.1 hypothetical protein -
  D9Y32_RS19250 (D9Y32_19275) rapC 3711009..3712115 (-) 1107 WP_009328417.1 tetratricopeptide repeat protein Regulator
  D9Y32_RS19255 (D9Y32_19280) - 3712226..3713485 (-) 1260 WP_009328418.1 MFS transporter -
  D9Y32_RS19260 (D9Y32_19285) - 3713627..3713980 (-) 354 WP_009328419.1 hypothetical protein -
  D9Y32_RS19265 (D9Y32_19290) rok 3714050..3714532 (-) 483 WP_009328420.1 hypothetical protein Regulator
  D9Y32_RS19275 (D9Y32_19300) - 3714818..3715276 (-) 459 WP_009328421.1 SMI1/KNR4 family protein -
  D9Y32_RS19280 (D9Y32_19305) - 3715317..3715739 (-) 423 WP_009328422.1 SMI1/KNR4 family protein -
  D9Y32_RS19285 (D9Y32_19310) - 3715754..3716041 (-) 288 WP_142782682.1 HNH/ENDO VII family nuclease -
  D9Y32_RS19290 (D9Y32_19315) - 3716145..3716624 (-) 480 WP_075646820.1 antitoxin YezG family protein -
  D9Y32_RS19295 (D9Y32_19320) - 3716628..3718676 (-) 2049 WP_142782683.1 T7SS effector LXG polymorphic toxin -
  D9Y32_RS19300 (D9Y32_19325) - 3718835..3719395 (-) 561 WP_237711641.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18464.27 Da        Isoelectric Point: 10.5742

>NTDB_id=282770 D9Y32_RS19265 WP_009328420.1 3714050..3714532(-) (rok) [Bacillus licheniformis strain TCCC 11148]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKNQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPRIQTN
NASQPFNKSITSIQREAALKILSMHKEGIRGAGLRKEIEKETGMKVKNMTTFMSGLMKHHPEIKKPGRGHYVIKREKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=282770 D9Y32_RS19265 WP_009328420.1 3714050..3714532(-) (rok) [Bacillus licheniformis strain TCCC 11148]
ATGTTTAATGAACGAGAAGCGTTACGTTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAGCTCAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGCGAGTTGGACAAAAACCAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCTAAAAGCTCATCTCCACGCATTCAGACAAAC
AATGCCTCGCAACCCTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAGGGCTTCGTAAGGAAATTGAGAAAGAAACAGGCATGAAAGTTAAAAATATGACAACTTTTATGA
GCGGACTCATGAAACACCATCCTGAAATCAAAAAACCAGGCCGCGGTCATTATGTTATTAAGCGTGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.623

100

0.488

Multiple sequence alignment