Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C7M21_RS10935 Genome accession   NZ_CP028207
Coordinates   2128388..2128723 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102743     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2123388..2133723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M21_RS10885 (C7M21_02179) comGC 2123621..2123887 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  C7M21_RS10890 (C7M21_02180) comGD 2123877..2124314 (+) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  C7M21_RS10895 (C7M21_02181) comGE 2124298..2124612 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  C7M21_RS10900 (C7M21_02182) comGF 2124521..2125021 (+) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  C7M21_RS10905 (C7M21_02183) comGG 2125022..2125399 (+) 378 WP_160223175.1 competence type IV pilus minor pilin ComGG Machinery gene
  C7M21_RS10910 (C7M21_02184) - 2125456..2125635 (+) 180 WP_160223174.1 YqzE family protein -
  C7M21_RS10915 (C7M21_02185) - 2125675..2126004 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  C7M21_RS10920 (C7M21_02186) tapA 2126263..2126934 (+) 672 WP_160223173.1 amyloid fiber anchoring/assembly protein TapA -
  C7M21_RS10925 (C7M21_02187) sipW 2126906..2127490 (+) 585 WP_160223172.1 signal peptidase I SipW -
  C7M21_RS10930 (C7M21_02188) tasA 2127555..2128340 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  C7M21_RS10935 (C7M21_02189) sinR 2128388..2128723 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  C7M21_RS10940 (C7M21_02190) sinI 2128757..2128930 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  C7M21_RS10945 (C7M21_02191) - 2129107..2129901 (-) 795 WP_076424968.1 YqhG family protein -
  C7M21_RS10950 (C7M21_02192) - 2129923..2131593 (-) 1671 WP_124934996.1 DEAD/DEAH box helicase -
  C7M21_RS10955 (C7M21_02193) gcvT 2132017..2133117 (+) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=282732 C7M21_RS10935 WP_003153104.1 2128388..2128723(-) (sinR) [Bacillus velezensis strain SRCM102743]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=282732 C7M21_RS10935 WP_003153104.1 2128388..2128723(-) (sinR) [Bacillus velezensis strain SRCM102743]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment