Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C7M20_RS11930 Genome accession   NZ_CP028206
Coordinates   2489415..2489750 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102742     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2484415..2494750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M20_RS11910 (C7M20_02411) gcvT 2485021..2486121 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  C7M20_RS11915 (C7M20_02412) - 2486545..2488215 (+) 1671 WP_124934996.1 DEAD/DEAH box helicase -
  C7M20_RS11920 (C7M20_02413) - 2488237..2489031 (+) 795 WP_076424968.1 YqhG family protein -
  C7M20_RS11925 (C7M20_02414) sinI 2489208..2489381 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  C7M20_RS11930 (C7M20_02415) sinR 2489415..2489750 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  C7M20_RS11935 (C7M20_02416) tasA 2489798..2490583 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  C7M20_RS11940 (C7M20_02417) sipW 2490648..2491232 (-) 585 WP_160223172.1 signal peptidase I SipW -
  C7M20_RS11945 (C7M20_02418) tapA 2491204..2491875 (-) 672 WP_160223173.1 amyloid fiber anchoring/assembly protein TapA -
  C7M20_RS11950 (C7M20_02419) - 2492134..2492463 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  C7M20_RS11955 (C7M20_02420) - 2492503..2492682 (-) 180 WP_160223174.1 YqzE family protein -
  C7M20_RS11960 (C7M20_02421) comGG 2492739..2493116 (-) 378 WP_160223175.1 competence type IV pilus minor pilin ComGG Machinery gene
  C7M20_RS11965 (C7M20_02422) comGF 2493117..2493617 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  C7M20_RS11970 (C7M20_02423) comGE 2493526..2493840 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  C7M20_RS11975 (C7M20_02424) comGD 2493824..2494261 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  C7M20_RS11980 (C7M20_02425) comGC 2494251..2494559 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=282648 C7M20_RS11930 WP_003153104.1 2489415..2489750(+) (sinR) [Bacillus velezensis strain SRCM102742]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=282648 C7M20_RS11930 WP_003153104.1 2489415..2489750(+) (sinR) [Bacillus velezensis strain SRCM102742]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment