Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M17_RS20600 Genome accession   NZ_CP028202
Coordinates   3962278..3962922 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3957278..3967922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS20570 (C7M17_04061) - 3957627..3957995 (-) 369 WP_014477834.1 hypothetical protein -
  C7M17_RS20575 - 3958110..3958235 (-) 126 WP_141770195.1 hypothetical protein -
  C7M17_RS20580 (C7M17_04062) degQ 3958457..3958597 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C7M17_RS20585 (C7M17_04063) - 3958782..3959651 (+) 870 WP_015714626.1 polyprenyl synthetase family protein -
  C7M17_RS20590 (C7M17_04064) comX 3959648..3959869 (+) 222 WP_014114983.1 competence pheromone ComX -
  C7M17_RS20595 (C7M17_04065) comP 3959885..3962197 (+) 2313 WP_068947635.1 histidine kinase Regulator
  C7M17_RS20600 (C7M17_04066) comA 3962278..3962922 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C7M17_RS20605 (C7M17_04067) yuxO 3962941..3963321 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  C7M17_RS20610 (C7M17_04068) mnhG 3963362..3963736 (-) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  C7M17_RS20615 (C7M17_04069) mrpF 3963720..3964004 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C7M17_RS20620 (C7M17_04070) mrpE 3964004..3964480 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C7M17_RS20625 (C7M17_04071) mrpD 3964486..3965967 (-) 1482 WP_046160793.1 Na+/H+ antiporter subunit D -
  C7M17_RS20630 (C7M17_04072) mrpC 3965960..3966301 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C7M17_RS20635 (C7M17_04073) mrpB 3966301..3966732 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=282453 C7M17_RS20600 WP_003220716.1 3962278..3962922(+) (comA) [Bacillus subtilis strain SRCM102754]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=282453 C7M17_RS20600 WP_003220716.1 3962278..3962922(+) (comA) [Bacillus subtilis strain SRCM102754]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment