Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M17_RS18665 Genome accession   NZ_CP028202
Coordinates   3575481..3576203 (+) Length   240 a.a.
NCBI ID   WP_122894786.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3570481..3581203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS18640 (C7M17_03678) degS 3570792..3571949 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M17_RS18645 (C7M17_03679) degU 3572032..3572721 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M17_RS18650 (C7M17_03680) fakBA 3572819..3573664 (+) 846 WP_122894788.1 DegV family protein -
  C7M17_RS18655 (C7M17_03681) comFA 3573770..3575161 (+) 1392 WP_122894787.1 ATP-dependent helicase ComFA Machinery gene
  C7M17_RS18660 (C7M17_03682) comFB 3575221..3575517 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M17_RS18665 (C7M17_03683) comFC 3575481..3576203 (+) 723 WP_122894786.1 comF operon protein ComFC Machinery gene
  C7M17_RS18670 (C7M17_03684) yvyF 3576277..3576696 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M17_RS18675 (C7M17_03685) flgM 3576777..3577043 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M17_RS18680 (C7M17_03686) flgN 3577059..3577541 (+) 483 WP_122894785.1 flagellar protein FlgN -
  C7M17_RS18685 (C7M17_03687) flgK 3577560..3579083 (+) 1524 WP_122894784.1 flagellar hook-associated protein FlgK -
  C7M17_RS18690 (C7M17_03688) flgL 3579094..3579990 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C7M17_RS18695 (C7M17_03689) yviE 3580037..3580612 (+) 576 WP_160245488.1 DUF6470 family protein -
  C7M17_RS18700 (C7M17_03690) fliW 3580633..3581064 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27507.72 Da        Isoelectric Point: 9.1388

>NTDB_id=282448 C7M17_RS18665 WP_122894786.1 3575481..3576203(+) (comFC) [Bacillus subtilis strain SRCM102754]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGNAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=282448 C7M17_RS18665 WP_122894786.1 3575481..3576203(+) (comFC) [Bacillus subtilis strain SRCM102754]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAACAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAACGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment