Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M17_RS18645 Genome accession   NZ_CP028202
Coordinates   3572032..3572721 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM102754     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3567032..3577721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS18625 (C7M17_03675) tagO 3567598..3568674 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C7M17_RS18630 (C7M17_03676) tagV 3568747..3569922 (-) 1176 WP_122894789.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C7M17_RS18635 (C7M17_03677) yvyE 3569922..3570575 (-) 654 WP_121591204.1 YigZ family protein -
  C7M17_RS18640 (C7M17_03678) degS 3570792..3571949 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M17_RS18645 (C7M17_03679) degU 3572032..3572721 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M17_RS18650 (C7M17_03680) fakBA 3572819..3573664 (+) 846 WP_122894788.1 DegV family protein -
  C7M17_RS18655 (C7M17_03681) comFA 3573770..3575161 (+) 1392 WP_122894787.1 ATP-dependent helicase ComFA Machinery gene
  C7M17_RS18660 (C7M17_03682) comFB 3575221..3575517 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M17_RS18665 (C7M17_03683) comFC 3575481..3576203 (+) 723 WP_122894786.1 comF operon protein ComFC Machinery gene
  C7M17_RS18670 (C7M17_03684) yvyF 3576277..3576696 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M17_RS18675 (C7M17_03685) flgM 3576777..3577043 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M17_RS18680 (C7M17_03686) flgN 3577059..3577541 (+) 483 WP_122894785.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=282446 C7M17_RS18645 WP_003219701.1 3572032..3572721(+) (degU) [Bacillus subtilis strain SRCM102754]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=282446 C7M17_RS18645 WP_003219701.1 3572032..3572721(+) (degU) [Bacillus subtilis strain SRCM102754]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATTAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment