Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C7M17_RS18655 Genome accession   NZ_CP028202
Coordinates   3573770..3575161 (+) Length   463 a.a.
NCBI ID   WP_122894787.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3568770..3580161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS18635 (C7M17_03677) yvyE 3569922..3570575 (-) 654 WP_121591204.1 YigZ family protein -
  C7M17_RS18640 (C7M17_03678) degS 3570792..3571949 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M17_RS18645 (C7M17_03679) degU 3572032..3572721 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M17_RS18650 (C7M17_03680) fakBA 3572819..3573664 (+) 846 WP_122894788.1 DegV family protein -
  C7M17_RS18655 (C7M17_03681) comFA 3573770..3575161 (+) 1392 WP_122894787.1 ATP-dependent helicase ComFA Machinery gene
  C7M17_RS18660 (C7M17_03682) comFB 3575221..3575517 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M17_RS18665 (C7M17_03683) comFC 3575481..3576203 (+) 723 WP_122894786.1 comF operon protein ComFC Machinery gene
  C7M17_RS18670 (C7M17_03684) yvyF 3576277..3576696 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M17_RS18675 (C7M17_03685) flgM 3576777..3577043 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M17_RS18680 (C7M17_03686) flgN 3577059..3577541 (+) 483 WP_122894785.1 flagellar protein FlgN -
  C7M17_RS18685 (C7M17_03687) flgK 3577560..3579083 (+) 1524 WP_122894784.1 flagellar hook-associated protein FlgK -
  C7M17_RS18690 (C7M17_03688) flgL 3579094..3579990 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52486.57 Da        Isoelectric Point: 9.9552

>NTDB_id=282447 C7M17_RS18655 WP_122894787.1 3573770..3575161(+) (comFA) [Bacillus subtilis strain SRCM102754]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=282447 C7M17_RS18655 WP_122894787.1 3573770..3575161(+) (comFA) [Bacillus subtilis strain SRCM102754]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGTCAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.352

100

0.994

Multiple sequence alignment