Detailed information NTG0282396

Bioinformatically predicted

Overview

• Name: priA
• Type: Machinery gene
• Locus tag: D0871_RS15990
• Genome accession: NZ_CP033141
• Coordinates: 3182315..3184519 (+)
• Length: 734 a.a.
• NCBI ID: WP_122016050.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 160807
• Function: DNA puliing through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3177315..3189519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0871_RS15945 (D0871_15945)	rplV	3177984..3178316 (-)	333	WP_005383164.1	50S ribosomal protein L22	-
D0871_RS15950 (D0871_15950)	rpsS	3178327..3178605 (-)	279	WP_004394525.1	30S ribosomal protein S19	-
D0871_RS15955 (D0871_15955)	rplB	3178627..3179451 (-)	825	WP_005489461.1	50S ribosomal protein L2	-
D0871_RS15960 (D0871_15960)	rplW	3179467..3179769 (-)	303	WP_004398471.1	50S ribosomal protein L23	-
D0871_RS15965 (D0871_15965)	rplD	3179766..3180368 (-)	603	WP_005379556.1	50S ribosomal protein L4	-
D0871_RS15970 (D0871_15970)	rplC	3180386..3181015 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
D0871_RS15975 (D0871_15975)	rpsJ	3181030..3181341 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
D0871_RS15980 (D0871_15980)	rpmE	3181799..3182020 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
D0871_RS15990 (D0871_15990)	priA	3182315..3184519 (+)	2205	WP_122016050.1	primosomal protein N'	Machinery gene
D0871_RS15995 (D0871_15995)	cytR	3184852..3185859 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
D0871_RS16000 (D0871_16000)	ftsN	3186035..3186580 (+)	546	WP_005481405.1	cell division protein FtsN	-
D0871_RS16005 (D0871_16005)	hslV	3186745..3187296 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
D0871_RS16010 (D0871_16010)	hslU	3187320..3188651 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
D0871_RS16015 (D0871_16015)	-	3189076..3189300 (-)	225	WP_029864913.1	hypothetical protein	-

Sequence

Protein

• Length: 734 a.a.
• Molecular weight: 82233.74 Da
• Isoelectric Point: 8.5714

>NTDB_id=282396 D0871_RS15990 WP_122016050.1 3182315..3184519(+) (priA) [Vibrio parahaemolyticus strain 160807]
MRPSIARVALPVPLDKQFDYAIPGHLFPIIGGRVSVPFGRQTLVGIVTAMVNHSDFPKDQLKPINAVLDSQPIWSEKLYS
LLTWCSQFYQYPLGDTLHNAMPAALRKGKPADFATLQEWQITESGKDKLMQGLDRRAVKQQKVLQMLVNGALPHQEFVDQ
EIASTVLKSLEEKGWIERIEKKPVITKWGQHVECDVEKPKLNHEQALAIASVNSQAGFACYLLEGVTGSGKTEVYLNLIK
PVLEKGKQALVLVPEIGLTPQTINRFKRRFNVPVDVIHSGLNETERLNAWLSARDKAAGIIIGTRSALLAPFADLGIIIV
DEEHDTSYKQQDSLRYHARDVAVMRAHKEQVPIVLGSATPALETLHNALSGKYHHLTLTQRAGSAVPTSNKVLDVKGQYL
ESGLSAPLIAEMRKHLKAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTFHQYSNEIRCHHCGSQQPVIHQCQGC
GSTQLVTVGVGTEQLEQQLAQLFPEYKAIRIDRDSTRRKGSLEDALDSIRKGEYQILIGTQMLAKGHHFPNVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVVLQTHHPEHSLLQALLEKDYRHFAMTALEERKLAQLPPYSFLTLF
KAEANQSEIVEDFLRQVRFTLESHPLFDDTCMVLGPTPSPLAKRAGKYRWQLLLQTQHRSLMQKLLTSAKPAIELLPNSK
KVRWNLDIEPQDLS

Nucleotide

• Length: 2205 bp

>NTDB_id=282396 D0871_RS15990 WP_122016050.1 3182315..3184519(+) (priA) [Vibrio parahaemolyticus strain 160807]
ATGCGTCCATCCATTGCTAGAGTGGCACTGCCCGTACCTCTCGACAAACAATTTGACTATGCCATCCCAGGACACCTGTT
TCCTATCATTGGCGGGCGCGTATCCGTACCTTTTGGGCGTCAAACGTTAGTTGGCATCGTCACCGCGATGGTTAATCACT
CGGACTTTCCCAAAGATCAACTCAAGCCAATCAATGCAGTTCTTGATTCTCAGCCGATATGGTCTGAAAAGCTTTATTCG
TTGCTGACTTGGTGCAGCCAGTTCTACCAATACCCACTTGGAGATACGCTACACAATGCGATGCCAGCAGCTCTGCGTAA
AGGAAAGCCTGCAGATTTTGCGACGCTACAAGAGTGGCAAATTACCGAATCCGGTAAAGACAAGCTGATGCAAGGGCTTG
ATCGTCGAGCGGTCAAACAACAAAAGGTCTTGCAAATGTTGGTTAACGGCGCTTTGCCTCACCAGGAATTTGTCGACCAA
GAGATAGCCTCAACTGTACTAAAGTCTTTAGAAGAGAAAGGCTGGATTGAACGTATCGAGAAGAAGCCTGTAATCACCAA
GTGGGGGCAGCACGTTGAATGCGACGTCGAGAAGCCAAAGCTCAACCACGAACAAGCGCTAGCTATTGCGAGTGTAAATA
GCCAAGCAGGTTTTGCCTGCTATTTACTAGAAGGCGTCACGGGCTCAGGTAAGACAGAAGTGTACCTCAACCTGATCAAA
CCGGTCTTAGAGAAAGGTAAACAAGCCTTGGTTTTAGTACCAGAGATTGGCTTAACACCACAAACCATCAACCGCTTTAA
ACGCCGTTTTAATGTGCCAGTTGACGTTATCCACTCCGGATTAAACGAGACGGAGCGTCTGAATGCGTGGCTTTCTGCAC
GCGACAAAGCGGCCGGAATCATTATCGGCACACGCTCTGCCCTACTCGCGCCTTTTGCTGATCTCGGGATTATCATTGTG
GACGAGGAACATGACACCTCTTACAAACAGCAAGATAGCTTGCGTTATCATGCACGCGATGTTGCTGTAATGCGCGCTCA
TAAAGAACAAGTTCCGATTGTTCTGGGCTCAGCTACACCTGCACTGGAGACATTGCACAATGCCTTGTCAGGCAAGTATC
ACCACTTAACCCTGACCCAACGCGCAGGCTCTGCGGTTCCTACTTCTAATAAAGTGCTCGACGTCAAAGGTCAGTATTTA
GAAAGTGGTTTATCTGCCCCATTGATTGCGGAAATGCGCAAACACCTTAAAGCAGGCAATCAGGTGATGCTGTTTCTTAA
CCGTCGTGGTTTCTCCCCTGCTCTCATGTGTCATGAATGTGGTTGGATTGCCGAATGCAAACGTTGTGATGCTTATTACA
CCTTCCACCAATACAGCAATGAGATTCGCTGCCACCATTGTGGCTCGCAGCAACCAGTAATTCATCAGTGTCAGGGCTGT
GGTTCAACTCAACTGGTTACCGTTGGTGTCGGTACCGAACAGTTAGAACAACAATTGGCACAACTGTTCCCCGAATACAA
AGCTATCCGTATCGACAGGGATAGCACGCGCCGCAAAGGTAGCTTAGAAGACGCGTTGGACTCCATCCGCAAGGGTGAAT
ATCAAATTTTAATTGGCACTCAAATGCTAGCTAAGGGACACCATTTCCCCAATGTAACGCTCGTCGCCTTGCTAGATGTT
GATGGCTCCCTATATAGTAGCGACTTTCGCGCCTCCGAAAGATTAGCGCAGTTATTCATTCAAGTCGCAGGGCGAGCCGG
ACGAGCAAGTAAGCCGGGGGAAGTGGTTTTACAGACTCACCATCCTGAGCACAGTTTGTTGCAAGCCTTATTGGAAAAGG
ACTACCGACACTTCGCTATGACGGCATTAGAGGAACGTAAACTGGCGCAGTTGCCACCGTACAGTTTCCTTACTCTATTT
AAAGCCGAAGCGAATCAGAGCGAGATCGTAGAAGATTTTCTGCGTCAAGTTCGCTTTACCTTAGAATCGCACCCTTTATT
TGACGACACCTGCATGGTGCTTGGTCCAACACCATCGCCTCTCGCCAAACGCGCAGGCAAATACCGTTGGCAGCTGTTAC
TCCAAACCCAGCACCGTTCATTAATGCAAAAGTTATTAACCAGTGCCAAACCTGCTATTGAGTTGTTGCCTAATTCCAAA
AAAGTTCGCTGGAATTTAGACATAGAACCACAAGATCTCAGCTAG

Domains

Predicted by InterProScan.

• 3DNA-binding domain (3BD) (PriA_3primeBD) (7-102)

• Primosomal protein N C-terminal domain (PriA_C) (633-730)

• DEAD/DEAH box helicase (DEAD) (220-365)

• PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA) (446-472)

• Helicase conserved C-terminal domain (Helicase_C) (500-589)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
priA	Acinetobacter baumannii D1279779	43.691	100	0.439
priA	Bacillus subtilis subsp. subtilis str. 168	34.005	100	0.368