Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D0871_RS14565 Genome accession   NZ_CP033141
Coordinates   2895442..2896170 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 160807     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2890442..2901170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS14550 (D0871_14550) clpC 2890877..2893450 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  D0871_RS14555 (D0871_14555) pgeF 2893598..2894326 (-) 729 WP_023624840.1 peptidoglycan editing factor PgeF -
  D0871_RS14560 (D0871_14560) rluD 2894328..2895305 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D0871_RS14565 (D0871_14565) comL 2895442..2896170 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  D0871_RS14570 (D0871_14570) - 2896305..2897786 (+) 1482 WP_025510249.1 lytic transglycosylase F -
  D0871_RS14575 (D0871_14575) raiA 2898117..2898443 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  D0871_RS14580 (D0871_14580) pheA 2898687..2899865 (+) 1179 WP_005468591.1 prephenate dehydratase -
  D0871_RS14585 (D0871_14585) yjjX 2899890..2900423 (+) 534 WP_023624841.1 inosine/xanthosine triphosphatase -
  D0871_RS14590 (D0871_14590) trpR 2900472..2900783 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=282393 D0871_RS14565 WP_005460312.1 2895442..2896170(+) (comL) [Vibrio parahaemolyticus strain 160807]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=282393 D0871_RS14565 WP_005460312.1 2895442..2896170(+) (comL) [Vibrio parahaemolyticus strain 160807]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACTCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCCTGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment