Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D0784_RS11070 Genome accession   NZ_CP033134
Coordinates   2356217..2358247 (-) Length   676 a.a.
NCBI ID   WP_045379097.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2351217..2363247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS11045 (D0784_11040) moaB 2351217..2351729 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  D0784_RS11050 (D0784_11045) moaA 2351830..2352819 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  D0784_RS11055 (D0784_11050) - 2353117..2354010 (+) 894 WP_005531401.1 YvcK family protein -
  D0784_RS11060 (D0784_11055) luxU 2354127..2354471 (-) 345 WP_045400708.1 quorum-sensing phosphorelay protein LuxU -
  D0784_RS11065 (D0784_11060) luxO 2354468..2355871 (-) 1404 WP_005433212.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  D0784_RS11070 (D0784_11065) uvrB 2356217..2358247 (-) 2031 WP_045379097.1 excinuclease ABC subunit UvrB Machinery gene
  D0784_RS11080 (D0784_11075) - 2359058..2359498 (-) 441 WP_038889848.1 hypothetical protein -
  D0784_RS11085 (D0784_11080) - 2359518..2360849 (-) 1332 WP_122019888.1 excinuclease ABC subunit B -
  D0784_RS11095 (D0784_11090) sph 2361479..2362966 (-) 1488 WP_240997106.1 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77063.62 Da        Isoelectric Point: 4.7490

>NTDB_id=282283 D0784_RS11070 WP_045379097.1 2356217..2358247(-) (uvrB) [Vibrio campbellii strain 170502]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNY
ELEKSADEIADQVVRPTGLLDPELEVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIKGKAILYADSITK
SMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAQKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=282283 D0784_RS11070 WP_045379097.1 2356217..2358247(-) (uvrB) [Vibrio campbellii strain 170502]
ATGAGTAAAGTTTATGAACTGGTCTCTGAATATCAACCATCCGGTGATCAGCCAACCGCCATCAAACAGTTATTAGAGGG
TTTAGACTCAGGCCTTGCCCATCAGACTCTGTTGGGTGTAACGGGCTCGGGTAAAACATTCACACTGGCAAACGTAATTG
CAGAAGCGCAGCGTCCGGCGATTCTTCTCGCGCCAAACAAAACACTTGCCGCGCAACTGTACGGCGAGATGAAAGCCTTC
TTCCCAAATAATGCCGTTGAGTACTTCGTTTCTTACTACGATTACTATCAACCCGAAGCTTATGTGCCAACGACGGATAC
CTTTATCGAAAAAGACGCGTCGGTGAATGCTCACATAGAGCAGATGCGTTTATCGGCAACAAAAGCATTATTGGAACGCA
AAGATGCAATCATTGTTGCGTCGGTTTCGGCCATTTATGGTTTGGGTGACCCAGAGTCGTACCTACAAATGATGCTTCAC
TTGCGCCGCGGTGATGTGATTGACCAGCGCGACATGCTGCGTCGTCTTGCAGAACTTCAATATTCACGTAACGATGTTGC
GTTTGAGCGTGGCCAGTTCCGTGTGCGTGGTGAAGTGATTGACATCTTCCCGGCGGAATCAGACCAAGACGCCGTGCGCG
TAGAGATGTTTGACGATGAAGTCGACTGTATCAGCGTATTTGACCCATTGACTGGTGTGGTCAAACAGCGAGACCTGCCG
CGTTATACGATTTACCCAAAGACGCACTATGTCACGCCACGTGAGCGTATTCTTGATGCCATTGAAAGCATTAAAGACGA
GCTTGAAGTGCGTAAGAAGCAGCTGTTAGACAACAACAAACTCCTAGAAGAGCAACGTATCAGCCAGCGCACTCAATTTG
ACATTGAGATGATGAACGAGCTGGGTTTCTGTTCCGGTATCGAAAACTACTCTCGTTACTTAAGCGGACGAGCGGAGGGG
GAGCCGCCACCAACGCTATTTGACTACTTACCTCACGATGGCTTGCTGATCATCGACGAATCACACGTTACCGTACCGCA
AATTGGCGCGATGTATAAAGGTGACCGCTCACGTAAAGAGACGCTGGTGGAGTTTGGTTTCCGTTTGCCTTCTGCATTGG
ATAACCGCCCGATGAAATTCGAAGAGTTCGAGGCGATTTCTCCACAGACAATATTTGTTTCTGCAACGCCGGGTAACTAC
GAACTTGAGAAGTCAGCCGATGAGATTGCGGACCAGGTTGTGCGTCCAACGGGTCTGCTTGATCCGGAATTAGAAGTTCG
CCCAGTTGCTACTCAGGTTGATGATCTGTTGTCTGAGATTCGAATTCGCGCAGCGCAAGACGAGCGTGTTCTTGTGACGA
CGCTTACTAAGCGTATGGCAGAAGACTTAACCGAATACCTGCACGAGCACGATGTGAAAGTTCGTTACCTTCACTCAGAT
ATTGACACGGTTGAGCGTGTAGAAATCATTCGCGACCTTCGTTTGGGCGAATTTGATGTGTTGGTTGGGATAAACTTATT
GCGAGAAGGTCTCGATATGCCAGAAGTGTCGCTGGTGGCAATCTTGGATGCAGATAAAGAAGGCTTCTTGCGTTCAGAGC
GTTCATTGATTCAGACCATCGGTCGTGCGGCTCGTAACATCAAAGGTAAAGCGATTCTTTACGCAGATTCGATCACTAAG
TCGATGAAGAAAGCGATGGACGAAACTGATCGTCGTCGAGAGAAGCAAAAAGCGTATAACGCAGAGATGGGTATTGAGCC
TCAAGCCTTGAAGCGAAATATTAAAGACATCATGGAGTTGGGGGATATCACCAAATCGAAGCGTCAGCGTAATACTAAGC
AAGTGCCGCTATCGAAAGTGGCAGAGCCTTCTCAGACTTACGAGATCATGTCTCCACAACAGCTGGAGAAAGAGATCAGT
CGTTTGGAAGCGGCGATGTACCAACACGCTCAAGATCTTGAATTTGAATTGGCGGCCCAGAAACGTGACGAGATTGAAAA
GCTGCGCGCTCAATTTATCGCGAACAGTTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(13-129)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.556

98.521

0.547
  uvrB Streptococcus pneumoniae R6

55.556

98.521

0.547
  uvrB Streptococcus pneumoniae D39

55.556

98.521

0.547