Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   D0784_RS05035 Genome accession   NZ_CP033134
Coordinates   1051970..1054228 (+) Length   752 a.a.
NCBI ID   WP_122019087.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1046970..1059228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS05010 (D0784_05010) - 1047260..1047829 (-) 570 WP_038891579.1 PilZ domain-containing protein -
  D0784_RS05015 (D0784_05015) lolC 1048094..1049302 (+) 1209 WP_041853212.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  D0784_RS05020 (D0784_05020) lolD 1049295..1050002 (+) 708 WP_050918315.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  D0784_RS05025 (D0784_05025) lolE 1050005..1051249 (+) 1245 WP_103413421.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  D0784_RS05030 (D0784_05030) - 1051452..1051961 (-) 510 WP_005431694.1 DUF2062 domain-containing protein -
  D0784_RS05035 (D0784_05035) comEC 1051970..1054228 (+) 2259 WP_122019087.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D0784_RS05040 (D0784_05040) msbA 1054260..1056011 (+) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  D0784_RS05045 (D0784_05045) lpxK 1056017..1057024 (+) 1008 WP_122019090.1 tetraacyldisaccharide 4'-kinase -
  D0784_RS05050 (D0784_05050) - 1057005..1057184 (+) 180 WP_005378451.1 Trm112 family protein -
  D0784_RS05055 (D0784_05055) kdsB 1057184..1057942 (+) 759 WP_038891570.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84115.29 Da        Isoelectric Point: 9.7457

>NTDB_id=282261 D0784_RS05035 WP_122019087.1 1051970..1054228(+) (comEC) [Vibrio campbellii strain 170502]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGIVARAVTPDDAKWLIRTHSSFRQQIITAVDTHISELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLIIPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLELTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIATPIAFQLSGVLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVTLYDTGKVWNSGSIAQQVISPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
TVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=282261 D0784_RS05035 WP_122019087.1 1051970..1054228(+) (comEC) [Vibrio campbellii strain 170502]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGCTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTTCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGTGACCGCT
CACTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCTTTTGGCATGAGTTTGGGATTTGTCATACGGCTTATAATCCCAAAATTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTCTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCGTTGGTTCATTGGAGCCCTTGGCGAGTGTTATTGCTCGCAGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGAACTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTTCCTTTGATGTTCCTAGCGCTGATTGCTACCCCAATCGCTTTTCAGTTGTCTGGTGTGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTAGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTAGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATGCTAGTGACGGGTGTCGCCCTATTTTATGAGCGTACAACAAATTCTTGGCGAGTGGATGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGACGCTTTATGACACAGGCAAAGTTTGGAACTCAGGGAGCATAGCTC
AGCAAGTTATCTCTCCCGTATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCCTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
ACCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGTTGGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAGTGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

96.941

100

0.969
  comEC Vibrio parahaemolyticus RIMD 2210633

66.489

100

0.665
  comEC Vibrio cholerae strain A1552

40.957

100

0.41