Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LPC_RS03600 Genome accession   NC_009494
Coordinates   759682..760131 (-) Length   149 a.a.
NCBI ID   WP_010946364.1    Uniprot ID   Q5ZXV4
Organism   Legionella pneumophila str. Corby     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754682..765131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS03580 (LPC_2671) - 754927..755319 (-) 393 WP_011945786.1 hypothetical protein -
  LPC_RS03585 (LPC_2670) - 755456..755833 (+) 378 WP_011945787.1 hypothetical protein -
  LPC_RS03590 (LPC_2669) - 756034..757341 (+) 1308 WP_011945788.1 tetratricopeptide repeat protein -
  LPC_RS03595 (LPC_2668) comEC 757397..759604 (-) 2208 WP_011945789.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPC_RS03600 (LPC_2667) pilE 759682..760131 (-) 450 WP_010946364.1 type IV pilin protein Machinery gene
  LPC_RS03605 (LPC_2666) - 760143..763652 (-) 3510 WP_011945790.1 pilus assembly protein -
  LPC_RS03610 (LPC_2665) - 763665..764177 (-) 513 WP_011945791.1 pilus assembly protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16296.57 Da        Isoelectric Point: 7.6922

>NTDB_id=28220 LPC_RS03600 WP_010946364.1 759682..760131(-) (pilE) [Legionella pneumophila str. Corby]
MLSHVHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=28220 LPC_RS03600 WP_010946364.1 759682..760131(-) (pilE) [Legionella pneumophila str. Corby]
ATGCTCAGTCATGTACATTTTATGAAGAATAGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATACAAAAATCCCGTCGTGCTGATGCTC
ATGCCACATTGACACAAGATCAAATCATTTTAGAACGCTGTTATTCACAGAATTTTTCCTATGCGGCAGCGTGTGGCGCC
CTACCAGCATTTCCTCAAACAACGCCGAATGGGTATTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACCGCAACCCCTGTCGGAACCCAAGCCAAAGATACCGAGTGTGCCAGTATGTCAATTAACCAGGCCAATGTAAAAACAG
CCGTAGATTCCTCCGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-38)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZXV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

100

100

1
  pilE Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment