Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6649_RS05810 Genome accession   NZ_CP028172
Coordinates   1166488..1167093 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain CFSAN064033     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161488..1172093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6649_RS05790 (C6649_05785) - 1161883..1163643 (-) 1761 WP_024792698.1 AAA family ATPase -
  C6649_RS05795 (C6649_05790) matP 1163829..1164281 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  C6649_RS05800 (C6649_05795) ompA 1164353..1165405 (-) 1053 WP_001670727.1 porin OmpA -
  C6649_RS05805 (C6649_05800) sulA 1165762..1166271 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  C6649_RS05810 (C6649_05805) sxy/tfoX 1166488..1167093 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  C6649_RS05815 (C6649_05810) yccS 1167080..1169233 (-) 2154 WP_000950876.1 YccS family putative transporter -
  C6649_RS05820 (C6649_05815) - 1169252..1169698 (-) 447 WP_021000158.1 YccF domain-containing protein -
  C6649_RS05825 (C6649_05820) helD 1169822..1171876 (+) 2055 WP_021000159.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=282011 C6649_RS05810 WP_001202375.1 1166488..1167093(+) (sxy/tfoX) [Salmonella enterica strain CFSAN064033]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=282011 C6649_RS05810 WP_001202375.1 1166488..1167093(+) (sxy/tfoX) [Salmonella enterica strain CFSAN064033]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment