Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   C9J78_RS10600 Genome accession   NZ_CP028165
Coordinates   2096334..2096903 (+) Length   189 a.a.
NCBI ID   WP_046597529.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN064037     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2091334..2101903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J78_RS10575 (C9J78_10570) cysE 2092547..2093194 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  C9J78_RS10580 (C9J78_10575) cysS 2093178..2094578 (+) 1401 WP_000631972.1 cysteine--tRNA ligase -
  C9J78_RS10585 (C9J78_10580) - 2094571..2094975 (+) 405 WP_103204465.1 Mini-ribonuclease 3 -
  C9J78_RS10590 (C9J78_10585) rlmB 2094983..2095729 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C9J78_RS10595 (C9J78_10590) - 2095729..2096253 (+) 525 WP_000664738.1 NYN domain-containing protein -
  C9J78_RS10600 (C9J78_10595) sigH 2096334..2096903 (+) 570 WP_046597529.1 sigma-70 family RNA polymerase sigma factor Regulator
  C9J78_RS10605 (C9J78_10600) rpmG 2097018..2097161 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  C9J78_RS10610 (C9J78_10605) secE 2097217..2097399 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  C9J78_RS10615 (C9J78_10610) nusG 2097412..2097960 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  C9J78_RS10620 (C9J78_10615) rplK 2098141..2098563 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  C9J78_RS10625 (C9J78_10620) rplA 2098771..2099463 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  C9J78_RS10635 (C9J78_10630) rplJ 2099735..2100235 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  C9J78_RS10640 (C9J78_10635) rplL 2100279..2100647 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  C9J78_RS10645 (C9J78_10640) - 2100822..2101430 (+) 609 WP_046597527.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23048.88 Da        Isoelectric Point: 9.6253

>NTDB_id=281955 C9J78_RS10600 WP_046597529.1 2096334..2096903(+) (sigH) [Staphylococcus aureus strain CFSAN064037]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMNLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=281955 C9J78_RS10600 WP_046597529.1 2096334..2096903(+) (sigH) [Staphylococcus aureus strain CFSAN064037]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGACAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGAATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment