Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   UTEX3055_RS03085 Genome accession   NZ_CP033061
Coordinates   610653..612653 (+) Length   666 a.a.
NCBI ID   WP_126146979.1    Uniprot ID   -
Organism   Synechococcus elongatus UTEX 3055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605653..617653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS03065 - 606939..608288 (+) 1350 WP_011377626.1 FAD-binding oxidoreductase -
  UTEX3055_RS03070 - 608290..609060 (-) 771 WP_126146977.1 HAD-IIB family hydrolase -
  UTEX3055_RS03075 - 609057..609719 (-) 663 WP_011243269.1 FHA domain-containing protein -
  UTEX3055_RS03080 - 609820..610533 (-) 714 WP_126146978.1 DevA family ABC transporter ATP-binding protein -
  UTEX3055_RS03085 uvrB 610653..612653 (+) 2001 WP_126146979.1 excinuclease ABC subunit UvrB Machinery gene
  UTEX3055_RS03090 - 612711..613166 (-) 456 WP_126146980.1 DUF3531 family protein -
  UTEX3055_RS03095 - 613258..614253 (-) 996 WP_126146981.1 Sll0314/Alr1548 family TPR repeat-containing protein -
  UTEX3055_RS03100 - 614328..615032 (+) 705 WP_126146982.1 ABC transporter ATP-binding protein -
  UTEX3055_RS03105 hslO 615065..615958 (+) 894 WP_126146983.1 Hsp33 family molecular chaperone HslO -
  UTEX3055_RS03110 - 616010..616624 (-) 615 WP_011243276.1 CPP1-like family protein -
  UTEX3055_RS03115 - 616702..616893 (-) 192 WP_126146984.1 hypothetical protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 76181.54 Da        Isoelectric Point: 4.8137

>NTDB_id=281699 UTEX3055_RS03085 WP_126146979.1 610653..612653(+) (uvrB) [Synechococcus elongatus UTEX 3055]
MTPFQLQARYQPMGDQPTAIAQLVEQVQAGAPYQTLLGATGTGKTFTIANVIAQVGRPALVLAHNKTLAAQLCNELREFF
PNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDMLRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPL
EVGAEINMREVLRQLVDVQYSRNDLESGRGRFRVKGDVLEIGPAYEDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRLN
IYPARHFVTPEERLEIAIAEIKEELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVGYCNGVENYARHLAGREPGSPP
ECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVLVDHGFRLPSAADNRPLKSEEFWEKVRQCIFVSATPGDWEIE
RSEEQIVEQVIRPTGVVDPEVFVRPTEGQVDDLLAEIQQRVSRQERALITTLTKRMAEDLTDYLSDRGVKVRYLHSEINS
IERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADRMTESME
KAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSFLEVSRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAA
KNLEFEEAAQYRDRIKKLRERLVGRH

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=281699 UTEX3055_RS03085 WP_126146979.1 610653..612653(+) (uvrB) [Synechococcus elongatus UTEX 3055]
ATGACGCCCTTTCAACTGCAAGCCCGCTATCAACCGATGGGAGACCAACCGACTGCGATCGCGCAGTTGGTCGAACAAGT
TCAGGCCGGTGCTCCCTATCAAACCTTGCTGGGCGCAACTGGAACGGGCAAGACTTTTACGATCGCCAACGTGATTGCGC
AAGTGGGGCGCCCGGCCTTAGTACTGGCCCACAACAAGACCTTAGCGGCTCAGCTGTGCAATGAGCTACGTGAGTTTTTC
CCGAATAACGCCGTCGAGTATTTCATCAGCTATTACGACTACTATCAACCGGAAGCTTACATTCCGGTGACCGACACTTA
TATCGCCAAAACAGCTTCGATCAATGAAGAGATCGATATGCTTCGGCACTCCGCCACGCGAAACTTATTTGAGCGACGTG
ATGTAATTGTCGTTGCTTCAATTAGCTGCATCTATGGCTTGGGTATTCCTAGCGAGTATTTAAAAGCAGCAATCCCGCTA
GAAGTCGGGGCTGAAATCAATATGCGCGAGGTTTTGCGACAACTCGTTGATGTTCAATACAGTCGCAATGATCTGGAGTC
AGGTCGCGGTCGATTCCGGGTGAAAGGCGATGTCCTCGAAATCGGTCCAGCCTATGAGGATCGGATTATTCGGGTCGAAT
TTTTTGGTGATGAAATTGATGCGATTCGCTATATCGATCCAGTCACCGGCGAAATCCTCCAAAGCCTCGATCGCCTCAAT
ATCTATCCTGCCCGTCACTTTGTGACGCCAGAAGAACGGCTGGAAATTGCGATCGCAGAAATCAAAGAAGAACTCAATCA
GCAGCTCCTGACTTTACAAGCAGAAGGCAAACTGGTGGAGGCTCAGCGGCTCGAGCAACGCACCCGCTATGACCTCGAAA
TGCTGCAGGAAGTAGGCTACTGCAACGGCGTTGAAAACTATGCCCGCCATCTCGCTGGCCGCGAGCCCGGATCGCCCCCA
GAATGTCTGATCGACTACTTCCCAAAAGATTGGCTCCTCGTTGTTGATGAATCCCACGTCACCGTTCCGCAGTTGCGGGG
CATGTATAACGGTGATCAGTCTCGCAAAAAGGTTTTGGTGGATCACGGCTTCCGCTTGCCAAGCGCTGCAGATAACCGTC
CACTAAAGTCGGAGGAATTTTGGGAGAAAGTGCGTCAGTGCATTTTTGTCTCGGCAACGCCTGGCGATTGGGAAATAGAG
CGATCGGAAGAGCAGATTGTTGAGCAAGTGATTCGCCCGACAGGCGTGGTTGATCCCGAGGTTTTCGTTCGCCCCACAGA
AGGACAAGTTGATGATCTCCTCGCCGAAATTCAGCAGCGGGTCAGTCGCCAAGAGCGAGCATTGATTACGACGCTGACCA
AGCGAATGGCTGAGGATTTAACGGATTATTTGAGCGATCGCGGCGTTAAAGTTCGCTATCTCCACTCAGAGATCAACTCG
ATCGAACGAATTGAAATCCTGCAGGATTTGCGCAATGGCGATTTTGATGTCTTGATTGGGGTTAACTTGCTACGGGAAGG
CTTAGACCTGCCAGAGGTATCCCTAGTCGCTATTTTAGATGCCGACAAGGAAGGCTTTTTGCGGACGGAACGCAGCCTCA
TTCAAACGATTGGGCGAGCAGCTCGCCACATCAATGGCCAAGCGATTCTGTATGCCGATCGCATGACCGAAAGTATGGAG
AAGGCGATCAGTGAAACGGAACGACGGCGACGTATTCAATTGGACTACAACCAACGTCACAACATTACCCCTCAACCGAT
TATCAAGCGATCGAGCAACGCCATTCTCTCGTTCCTTGAAGTCTCGCGGCGGCTGAATAAGCAAGAGTTAGAAGTAGCAG
TCAGTCAAGCCGATGATCTCTCCCTCGAAGAGATTCCCAACTTGATTACGCAACTAGAAGCCCAGATGAAAGAGGCCGCT
AAAAATCTGGAATTTGAGGAGGCTGCTCAATACCGCGATCGCATCAAAAAATTACGTGAACGCCTGGTGGGTCGCCACTA
A

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(627-660)

Type III restriction enzyme, res subunit (ResIII)

(14-118)

Helicase conserved C-terminal domain (Helicase_C)

(432-542)

UvrB interaction domain (UvrB_inter)

(158-247)

Ultra-violet resistance protein B (UvrB)

(550-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.967

98.799

0.583
  uvrB Streptococcus pneumoniae R6

58.967

98.799

0.583
  uvrB Streptococcus pneumoniae D39

58.967

98.799

0.583

Multiple sequence alignment