Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   C9I27_RS05290 Genome accession   NZ_CP028148
Coordinates   1007444..1008754 (-) Length   436 a.a.
NCBI ID   WP_002989693.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TJ11-001     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1002444..1013754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I27_RS05265 - 1003050..1004102 (-) 1053 WP_002989701.1 BMP family protein -
  C9I27_RS05270 - 1004196..1004585 (-) 390 WP_002984531.1 cytidine deaminase -
  C9I27_RS05275 - 1005236..1005829 (-) 594 WP_002989699.1 class I SAM-dependent methyltransferase -
  C9I27_RS05280 coaA 1006097..1007017 (+) 921 WP_002989697.1 type I pantothenate kinase -
  C9I27_RS05285 rpsT 1007071..1007319 (+) 249 WP_009881183.1 30S ribosomal protein S20 -
  C9I27_RS05290 ciaH 1007444..1008754 (-) 1311 WP_002989693.1 cell wall metabolism sensor histidine kinase WalK Regulator
  C9I27_RS05295 ciaR 1008747..1009421 (-) 675 WP_002984519.1 response regulator transcription factor Regulator
  C9I27_RS05300 - 1009767..1012304 (-) 2538 WP_002989692.1 M1 family metallopeptidase -
  C9I27_RS05310 phoU 1012509..1013162 (-) 654 WP_002984514.1 phosphate signaling complex protein PhoU -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50119.65 Da        Isoelectric Point: 9.0641

>NTDB_id=281694 C9I27_RS05290 WP_002989693.1 1007444..1008754(-) (ciaH) [Streptococcus pyogenes strain TJ11-001]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKYRLGSIETTSLMNFYGQEEKYHTITVRVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIVKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=281694 C9I27_RS05290 WP_002989693.1 1007444..1008754(-) (ciaH) [Streptococcus pyogenes strain TJ11-001]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGACAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAATACCGTTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAAGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTACGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAACTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGTGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.895

100

0.58

  ciaH Streptococcus pneumoniae Rx1

51.37

100

0.516

  ciaH Streptococcus pneumoniae D39

51.37

100

0.516

  ciaH Streptococcus pneumoniae R6

51.37

100

0.516

  ciaH Streptococcus pneumoniae TIGR4

51.37

100

0.516


Multiple sequence alignment