Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   C9I78_RS01335 Genome accession   NZ_CP028141
Coordinates   265411..266055 (-) Length   214 a.a.
NCBI ID   WP_108744711.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain R14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 267050..275413 265411..266055 flank 995


Gene organization within MGE regions


Location: 265411..275413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I78_RS01335 (C9I78_01335) qstR 265411..266055 (-) 645 WP_108744711.1 LuxR C-terminal-related transcriptional regulator Regulator
  C9I78_RS01340 (C9I78_01340) ssb 266334..266864 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  C9I78_RS01345 (C9I78_01345) - 267050..268366 (+) 1317 WP_108744712.1 site-specific integrase -
  C9I78_RS01350 (C9I78_01350) - 268379..269932 (+) 1554 WP_108744713.1 site-specific integrase -
  C9I78_RS01355 (C9I78_01355) - 269925..272306 (+) 2382 WP_108744714.1 integrase -
  C9I78_RS01360 (C9I78_01360) - 272309..272725 (+) 417 WP_108744715.1 hypothetical protein -
  C9I78_RS01365 (C9I78_01365) - 272736..273221 (+) 486 WP_108744716.1 VPA1267 family protein -
  C9I78_RS01370 (C9I78_01370) - 273218..275413 (+) 2196 WP_108744717.1 ATP-dependent RecD-like DNA helicase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24387.19 Da        Isoelectric Point: 8.0617

>NTDB_id=281623 C9I78_RS01335 WP_108744711.1 265411..266055(-) (qstR) [Vibrio parahaemolyticus strain R14]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKDFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=281623 C9I78_RS01335 WP_108744711.1 265411..266055(-) (qstR) [Vibrio parahaemolyticus strain R14]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGGACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGCCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment