Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   At12D1_RS08500 Genome accession   NZ_CP033031
Coordinates   1671312..1674278 (+) Length   988 a.a.
NCBI ID   WP_080866603.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 12D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666312..1679278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At12D1_RS08465 (At12D1_16180) - 1666519..1666923 (+) 405 WP_080866268.1 DUF2946 family protein -
  At12D1_RS08470 (At12D1_16190) - 1666971..1668335 (+) 1365 WP_080866269.1 PepSY-associated TM helix domain-containing protein -
  At12D1_RS08475 (At12D1_16200) - 1668404..1668880 (-) 477 WP_003507634.1 nuclear transport factor 2 family protein -
  At12D1_RS08480 (At12D1_16210) - 1668893..1669504 (-) 612 WP_080864212.1 NAD(P)-dependent oxidoreductase -
  At12D1_RS08485 (At12D1_16220) - 1669660..1670043 (+) 384 WP_003507622.1 winged helix-turn-helix transcriptional regulator -
  At12D1_RS08490 (At12D1_16230) - 1670161..1670583 (-) 423 WP_003507621.1 GNAT family N-acetyltransferase -
  At12D1_RS08495 (At12D1_16240) - 1670692..1671045 (-) 354 WP_020009373.1 DMT family protein -
  At12D1_RS08500 (At12D1_16250) uvrB 1671312..1674278 (+) 2967 WP_080866603.1 excinuclease ABC subunit UvrB Machinery gene
  At12D1_RS08505 (At12D1_16260) - 1674360..1674893 (-) 534 WP_233282760.1 hypothetical protein -
  At12D1_RS08510 (At12D1_16270) - 1675150..1676118 (+) 969 WP_003507617.1 alpha/beta hydrolase -
  At12D1_RS08515 (At12D1_16280) - 1676147..1676572 (-) 426 WP_003507616.1 DUF1801 domain-containing protein -
  At12D1_RS08520 (At12D1_16290) - 1676736..1677191 (+) 456 WP_003507615.1 PRC-barrel domain-containing protein -
  At12D1_RS08525 (At12D1_16300) - 1677350..1677958 (+) 609 WP_003507614.1 DUF922 domain-containing Zn-dependent protease -
  At12D1_RS08530 (At12D1_16310) - 1677966..1678568 (-) 603 WP_003507613.1 J domain-containing protein -

Sequence

Protein


Download         Length: 988 a.a.        Molecular weight: 108552.08 Da        Isoelectric Point: 5.6368

>NTDB_id=281622 At12D1_RS08500 WP_080866603.1 1671312..1674278(+) (uvrB) [Agrobacterium tumefaciens strain 12D1]
MARSPKNSTSSPSGFEEAPQSSFEGAPLSGSVSDWVKQLEAEAEASSVETQREIASKAGKHRKKIEIEARKDAEKAASKT
AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEDAANLAPGAVTATVDALSKLIESGNPLFKDGKLWTPHRPA
RPPKSEGGVTIRMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY
SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY
TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK
TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDVEMLEATGSCAGIENYSRYLT
GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA
TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR
YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHVRADISGASGKGFADGGHLVGNNLQSHLN
ALEKSMRDAAADLDFEKAARLRDEIKRLKAAELATMDDPMAKEEARAIEGGGKNNRRSHLSISPPEGETSGRTEAGAAPN
ESGKSLFTKPSLDEMGPGSDAGKPLFRRNTLDEMTVGRTEKPVRSAVPDKPETESGKRLSPLMEGQPERATDDPRPLVRG
KIGAGSYEDAGEQKRKSRTKGKTGRPGR

Nucleotide


Download         Length: 2967 bp        

>NTDB_id=281622 At12D1_RS08500 WP_080866603.1 1671312..1674278(+) (uvrB) [Agrobacterium tumefaciens strain 12D1]
ATGGCCAGATCACCGAAAAACTCCACCTCCTCGCCCTCGGGCTTCGAGGAAGCTCCGCAATCGTCATTCGAAGGTGCGCC
GCTCAGCGGCAGCGTCTCCGATTGGGTGAAGCAGCTCGAGGCGGAAGCGGAGGCATCCTCCGTGGAAACCCAGCGCGAAA
TCGCCTCAAAGGCGGGCAAGCACCGCAAGAAGATCGAGATCGAAGCACGCAAGGACGCGGAGAAGGCCGCCTCGAAGACG
GCCAAGAACACCACGGCCTCCAAGACCGCGCGCGGTGTTTCCATCGGCGCATCGAGCGATCCGAAAACCCGCGCCGCCGC
CGGCCTCAATCCGGTCGCCGGTATGGACGTATCGCTGGAGGATGCCGCCAACCTCGCGCCGGGCGCCGTCACCGCAACGG
TGGACGCGCTGTCGAAGCTGATCGAAAGCGGCAATCCGCTGTTCAAGGACGGCAAGTTGTGGACGCCGCACCGGCCGGCC
CGGCCGCCGAAATCCGAAGGCGGCGTTACCATCCGCATGGACTCGGAGTACCAGCCCGCCGGCGACCAGCCGACGGCCAT
CGCCGATCTTGTCGAGGGCATCAATTCCGGCGAGCGCAGCCAGGTCCTGCTCGGCGTCACCGGCTCCGGCAAGACCTTCA
CCATGGCCAAGGTAATTGAGGCGACGCAGCGCCCGGCTGTCATTCTCGCGCCTAACAAGACGCTGGCCGCGCAGCTCTAT
TCGGAGTTCAAGAACTTCTTCCCCGACAATGCGGTGGAATATTTCGTCTCCTACTACGATTATTACCAGCCGGAAGCCTA
TGTGCCGCGCTCCGACACCTTCATCGAGAAGGAATCCTCGATCAACGAGCAGATCGACCGGATGCGCCACTCCGCCACCC
GCTCACTGCTGGAGCGTGACGACTGCATCATCGTCGCCTCCGTCTCCTGCATCTACGGTATCGGCTCGGTCGAAACCTAC
ACCGCCATGACCTTCCAGATGCAGGTGGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTCGTGGCCCAGCAATA
CAAGCGCCGCGACATGGATTTCCAGCGCGGTTCGTTCCGCGTGCGCGGCGATACCATCGAAATTTTCCCCGCCCACCTTG
AGGATGCCGCCTGGCGCATCTCGATGTTCGGCGACGAAATCGATTCCATCACCGAATTCGATCCGCTGACCGGCCAGAAA
ACCGGCGACCTGCAATCCGTCAAGATCTACGCCAATTCGCACTATGTCACCCCGCGCCCGACGCTGAACGGCGCGATCAA
GTCGATCAAGGAAGAGCTGAAGGTCCGTCTCGCCGAGCTGGAAAAAGCCGGGCGTCTGCTGGAAGCCCAGCGACTGGAGC
AGCGCACCCGCTATGATGTGGAAATGCTGGAGGCGACCGGCTCCTGCGCCGGCATCGAGAACTATTCGCGTTATCTCACC
GGCCGTAATCCCGGCGAGCCGCCGCCGACGCTGTTCGAATATATCCCTGATAACGCGCTGCTGTTCATCGACGAAAGCCA
CGTCTCCGTCAGCCAGATCGGCGGCATGTATCGCGGCGACTTCAGGCGCAAGGCGACGCTGGCCGAATATGGCTTCCGTC
TGCCCTCCTGCATGGACAACCGGCCGCTGCGCTTCGAGGAATGGGATGCCATGCGGCCTCTGACGGTCGCGGTTTCGGCT
ACCCCCGGCTCATGGGAGATGGAACAGGCCGGCGGCGTCTTTGCCGAACAGGTCATCCGCCCGACCGGCCTTATCGATCC
GCCGGTGGAGGTTCGTTCCGCCCGTAGCCAGGTGGACGATGTTCTCGGTGAAATCCGCGAGACAGCCGCCAAAGGCTATC
GCACCCTCTGCACCGTGCTGACGAAGCGCATGGCCGAGGACCTGACCGAATATCTGCACGAACAGGGCGTTCGCGTGCGT
TATATGCACTCGGATATCGACACGCTGGAGCGCATCGAGATCATCCGCGATCTGCGCCTCGGTGCTTTCGACGTGCTTGT
TGGCATCAACCTTCTGCGCGAAGGTCTCGATATTCCCGAATGTGGTTTTGTGGCGATCCTCGATGCCGACAAGGAAGGCT
TCCTGCGCTCCGAAACCTCACTGATCCAGACAATCGGCCGCGCCGCCCGTAACGTCGACGGCAAGGTCATCCTTTACGCC
GACAACATCACCGGCTCGATGAAGCGGGCGATGGAGGAAACCTCCCGCCGCCGCGAAAAGCAGATGGCCTATAACGCCGA
ACACGGCATCACGCCGGAATCGGTCAAGGCGAAAATCTCGGATATTCTTGATTCTGTTTATGAGCGCGACCACGTAAGGG
CCGATATATCAGGCGCTTCCGGCAAGGGCTTCGCCGATGGCGGCCATCTGGTCGGCAACAATCTGCAGTCCCATCTCAAC
GCGCTGGAAAAATCCATGCGCGACGCCGCAGCAGATCTGGACTTCGAAAAGGCCGCCCGCCTGCGCGACGAAATCAAACG
CCTCAAGGCGGCAGAACTCGCCACCATGGATGATCCCATGGCGAAGGAAGAGGCCCGCGCCATCGAAGGCGGCGGAAAAA
ACAACAGACGCAGCCACTTGTCGATCTCCCCGCCTGAGGGGGAGACATCCGGCAGGACGGAGGCGGGCGCCGCGCCGAAC
GAAAGCGGCAAATCCCTTTTCACCAAACCCTCACTGGATGAAATGGGCCCCGGCTCAGATGCGGGAAAACCGCTGTTCCG
CAGGAACACGCTGGACGAGATGACCGTGGGCAGAACCGAAAAGCCCGTGCGCAGCGCAGTACCGGACAAGCCCGAGACCG
AATCCGGCAAACGCTTGTCACCGCTCATGGAAGGCCAGCCGGAGCGTGCTACCGATGATCCGCGGCCGCTGGTGCGTGGC
AAGATTGGCGCGGGGTCCTATGAAGATGCCGGCGAGCAGAAGCGCAAAAGCCGGACGAAGGGCAAGACGGGCCGACCGGG
ACGCTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(799-830)

Helicase conserved C-terminal domain (Helicase_C)

(607-710)

Ultra-violet resistance protein B (UvrB)

(718-759)

UvrB interaction domain (UvrB_inter)

(326-415)

Type III restriction enzyme, res subunit (ResIII)

(180-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.639

67.308

0.374
  uvrB Streptococcus pneumoniae R6

55.639

67.308

0.374
  uvrB Streptococcus pneumoniae D39

55.639

67.308

0.374

Multiple sequence alignment