Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | C9I78_RS01065 | Genome accession | NZ_CP028141 |
| Coordinates | 211509..212087 (+) | Length | 192 a.a. |
| NCBI ID | WP_005480484.1 | Uniprot ID | Q87L63 |
| Organism | Vibrio parahaemolyticus strain R14 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 206509..217087
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9I78_RS01050 (C9I78_01050) | oxyR | 206832..207740 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| C9I78_RS01055 (C9I78_01055) | - | 207796..210366 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| C9I78_RS01060 (C9I78_01060) | pilM | 210509..211525 (+) | 1017 | WP_043036352.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| C9I78_RS01065 (C9I78_01065) | pilN | 211509..212087 (+) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| C9I78_RS01070 (C9I78_01070) | pilO | 212080..212673 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| C9I78_RS01075 (C9I78_01075) | pilP | 212663..213178 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| C9I78_RS01080 (C9I78_01080) | pilQ | 213210..214958 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| C9I78_RS01085 (C9I78_01085) | aroK | 215147..215665 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| C9I78_RS01090 (C9I78_01090) | aroB | 215697..216797 (+) | 1101 | WP_025546399.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.91 Da Isoelectric Point: 6.6554
>NTDB_id=281619 C9I78_RS01065 WP_005480484.1 211509..212087(+) (pilN) [Vibrio parahaemolyticus strain R14]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=281619 C9I78_RS01065 WP_005480484.1 211509..212087(+) (pilN) [Vibrio parahaemolyticus strain R14]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTGGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTTATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTGGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTTATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |