Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   At12D1_RS06560 Genome accession   NZ_CP033031
Coordinates   1299480..1300088 (-) Length   202 a.a.
NCBI ID   WP_020809782.1    Uniprot ID   A0ABD5LH27
Organism   Agrobacterium tumefaciens strain 12D1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1294480..1305088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At12D1_RS06545 (At12D1_12530) - 1295284..1296165 (-) 882 WP_080866159.1 alpha/beta fold hydrolase -
  At12D1_RS06550 (At12D1_12540) parE 1296390..1298513 (+) 2124 WP_080866160.1 DNA topoisomerase IV subunit B -
  At12D1_RS06555 (At12D1_12550) - 1298581..1299471 (+) 891 WP_080866161.1 NAD-dependent epimerase/dehydratase family protein -
  At12D1_RS06560 (At12D1_12560) clpP 1299480..1300088 (-) 609 WP_020809782.1 ATP-dependent Clp protease proteolytic subunit Regulator
  At12D1_RS06565 (At12D1_12570) - 1300132..1300488 (-) 357 WP_080866162.1 SRPBCC family protein -
  At12D1_RS06570 (At12D1_12580) - 1300485..1300799 (-) 315 WP_003502944.1 ArsR/SmtB family transcription factor -
  At12D1_RS06575 (At12D1_12590) - 1300956..1302515 (+) 1560 WP_003502946.1 phospholipase D family protein -
  At12D1_RS06580 (At12D1_12600) - 1302538..1303371 (-) 834 WP_060725838.1 response regulator -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22918.40 Da        Isoelectric Point: 6.2321

>NTDB_id=281619 At12D1_RS06560 WP_020809782.1 1299480..1300088(-) (clpP) [Agrobacterium tumefaciens strain 12D1]
MRETMQLVPMVVEQSSRGERSFDIYSRLLRERIIFLNGEVNDTVSALVCAQLLFLEAENPKKPIHLYINSPGGMVTSGFA
MYDTMRYIRAPVHTLCMGTARSMGSFLLMAGEPGMRAALPNASILIHQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAE
HCGRSYEEFERAMDRDRFMTVQEALEWGLIDRILEVREDAAA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=281619 At12D1_RS06560 WP_020809782.1 1299480..1300088(-) (clpP) [Agrobacterium tumefaciens strain 12D1]
ATGCGCGAAACGATGCAACTCGTCCCTATGGTAGTCGAACAATCGTCAAGGGGAGAAAGGTCTTTCGACATCTACTCCCG
CCTGTTGCGCGAGAGGATCATCTTCCTCAACGGAGAGGTGAACGATACGGTTTCCGCGCTGGTCTGCGCGCAATTGCTGT
TTCTTGAAGCGGAAAACCCGAAGAAGCCGATCCATCTCTACATCAATTCGCCGGGTGGCATGGTGACCAGCGGTTTCGCC
ATGTATGACACCATGCGCTACATTCGCGCGCCGGTTCACACCTTGTGCATGGGGACGGCCCGTTCCATGGGCTCGTTCCT
GCTGATGGCGGGCGAACCCGGCATGCGGGCGGCGCTGCCCAATGCCAGCATCCTCATTCACCAGCCATCAGGCGGTTTTC
AGGGGCAGGCGTCGGACATGCTTATCCACGCCGAGGAAATCAGGCAGACAAAACACCGCATGACGCGGCTTTATGCCGAA
CATTGCGGGCGCAGCTACGAGGAGTTCGAGAGGGCGATGGATCGCGACCGGTTCATGACGGTGCAGGAGGCTCTGGAATG
GGGCCTGATCGACCGCATTCTGGAAGTCCGCGAGGATGCGGCGGCATAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5LH27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.333

96.535

0.515
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.026

93.564

0.515
  clpP Lactococcus lactis subsp. cremoris KW2

49.738

94.554

0.47
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

48.168

94.554

0.455
  clpP Streptococcus pneumoniae Rx1

47.895

94.059

0.45
  clpP Streptococcus pneumoniae D39

47.895

94.059

0.45
  clpP Streptococcus pneumoniae R6

47.895

94.059

0.45
  clpP Streptococcus pneumoniae TIGR4

47.895

94.059

0.45
  clpP Streptococcus pyogenes MGAS315

46.392

96.04

0.446
  clpP Streptococcus pyogenes JRS4

46.392

96.04

0.446
  clpP Streptococcus mutans UA159

45

99.01

0.446
  clpP Streptococcus thermophilus LMG 18311

45.263

94.059

0.426
  clpP Streptococcus thermophilus LMD-9

45.263

94.059

0.426

Multiple sequence alignment