NTDB

Overview

Name	uvrB	Type	Machinery gene
Locus tag	AtA6_RS08145	Genome accession	NZ_CP033027
Coordinates	1606825..1609806 (+)	Length	993 a.a.
NCBI ID	WP_038492873.1	Uniprot ID	-
Organism	Agrobacterium tumefaciens strain A6
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1601825..1614806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AtA6_RS08110 (AtA6_15800)	-	1601831..1602424 (+)	594	WP_003513035.1	hypothetical protein	-
AtA6_RS08115 (AtA6_15810)	-	1602524..1602940 (+)	417	WP_038491470.1	DUF2946 family protein	-
AtA6_RS08120 (AtA6_15820)	-	1602989..1604353 (+)	1365	WP_038491473.1	PepSY-associated TM helix domain-containing protein	-
AtA6_RS08125 (AtA6_15830)	-	1604530..1605006 (-)	477	WP_038491475.1	nuclear transport factor 2 family protein	-
AtA6_RS08130 (AtA6_15840)	-	1605019..1605630 (-)	612	WP_038491478.1	NAD(P)-dependent oxidoreductase	-
AtA6_RS08135 (AtA6_15850)	-	1605785..1606168 (+)	384	WP_038491481.1	winged helix-turn-helix transcriptional regulator	-
AtA6_RS08140 (AtA6_15860)	-	1606230..1606583 (-)	354	WP_003513041.1	DMT family protein	-
AtA6_RS08145 (AtA6_15870)	uvrB	1606825..1609806 (+)	2982	WP_038492873.1	excinuclease ABC subunit UvrB	Machinery gene
AtA6_RS08150 (AtA6_15880)	-	1609811..1610479 (-)	669	WP_038491484.1	uracil-DNA glycosylase	-
AtA6_RS28580 (AtA6_15890)	-	1610476..1611078 (-)	603	WP_167381493.1	hypothetical protein	-
AtA6_RS28585	-	1611079..1611471 (-)	393	WP_139322512.1	hypothetical protein	-
AtA6_RS08155 (AtA6_15900)	-	1611476..1612309 (-)	834	WP_038492875.1	nucleoside triphosphate pyrophosphohydrolase family protein	-
AtA6_RS08160 (AtA6_15910)	-	1612408..1612833 (-)	426	WP_038491487.1	DUF1801 domain-containing protein	-
AtA6_RS08165 (AtA6_15920)	-	1612974..1613429 (+)	456	WP_003513045.1	PRC-barrel domain-containing protein	-
AtA6_RS08170 (AtA6_15930)	-	1613587..1614198 (+)	612	WP_038491490.1	DUF922 domain-containing Zn-dependent protease	-

Sequence

Protein

Download Length: 993 a.a. Molecular weight: 109035.70 Da Isoelectric Point: 5.5654

                                >NTDB_id=281587 AtA6_RS08145 WP_038492873.1 1606825..1609806(+) (uvrB) [Agrobacterium tumefaciens strain A6]

MARSPKNSKPSNSGFEEAPQSSFEGAPLSGSVADWVKQLEAEAEAGSVETQREVASKAGKHRKKIEIEARKEAEKAANKT

AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTPHRPA

RPPKSEGGVTIRMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY

SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY

TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK

TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELRVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLT

GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA

TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR

YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA

DNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQSHLN

ALEKSMRDAAADLDFEKAARLRDEIKRLKATELAVMDDPMAKEEAKSLEGGGRSKKKETNARNGSISPLAGDISGGTEDG

AASANESGKSLFAKPSLDEMGPGSDTGKPLFRRNTLDEMTVGRTEKPVRGEVPGKPETETGKRFSPLMEGQPERTKDDPR

PLVRGKIGAGSYEDAGEQKRKSRTKGKTGRPGQ

Nucleotide

Download Length: 2982 bp

                                >NTDB_id=281587 AtA6_RS08145 WP_038492873.1 1606825..1609806(+) (uvrB) [Agrobacterium tumefaciens strain A6]

ATGGCCAGATCACCCAAAAATTCCAAACCCTCGAATTCCGGCTTCGAGGAAGCTCCGCAATCGTCGTTCGAAGGCGCGCC

GCTCAGCGGCAGCGTTGCCGATTGGGTAAAGCAGCTCGAGGCGGAAGCCGAAGCCGGCTCGGTGGAAACCCAGCGCGAAG

TCGCCTCGAAAGCTGGCAAGCACCGCAAGAAGATCGAGATCGAAGCGCGCAAGGAAGCGGAAAAAGCGGCCAACAAAACG

GCTAAAAACACCACGGCTTCCAAGACAGCGCGCGGCGTTTCCATCGGCGCGTCGAGCGATCCAAAAACCCGCGCCGCCGC

CGGTCTCAATCCCGTGGCTGGCATGGACGTTTCCCTGGAGGAGGCGGCCAATCTCGCACCGGGTGCCGTCACCGCCACCG

TCGAGGCGCTATCGGCGCTTATCGAGAGCGGCAATCCGCTGTTCAAGGACGGCAAGATGTGGACGCCGCACCGGCCGGCC

CGTCCGCCGAAATCCGAAGGCGGCGTTACAATCCGCATGGACTCGGAGTATCAACCGGCAGGCGACCAGCCAACGGCGAT

TGCCGATCTCGTGGAAGGCATCAATTCCGGCGAGCGCAGCCAGGTCCTGCTCGGCGTCACCGGCTCCGGCAAAACCTTCA

CCATGGCCAAGGTGATCGAGGCAACCCAGCGCCCGGCCGTCATCCTTGCGCCCAACAAGACGCTGGCCGCGCAGCTCTAT

TCCGAGTTCAAGAACTTCTTCCCCGACAATGCGGTAGAGTACTTCGTCTCATATTACGATTATTATCAGCCGGAAGCCTA

TGTGCCGCGCTCCGACACCTTCATCGAGAAGGAATCCTCGATCAACGAACAGATCGACCGGATGCGCCACTCCGCCACCC

GCTCGCTGCTGGAACGCGACGACTGCATCATCGTCGCTTCGGTTTCCTGCATCTATGGTATTGGCTCGGTGGAAACCTAT

ACCGCCATGACCTTCCAGATGCAGGTGGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTTGTGGCCCAGCAATA

CAAGCGCCGCGACATGGATTTCCAGCGCGGCTCCTTCCGCGTGCGCGGCGATACCATCGAAATCTTCCCTGCCCACCTTG

AGGATGCCGCCTGGCGCATCTCGATGTTCGGCGACGAAATCGATTCCATTACCGAATTCGACCCGCTGACCGGCCAGAAA

ACCGGCGATCTGCAATCCGTCAAGATCTACGCCAATTCGCACTATGTCACCCCGCGCCCGACGCTGAACGGCGCGATCAA

GTCGATCAAGGAAGAGCTGAGGGTCCGCCTCGCCGAGTTGGAAAAGGCGGGACGCCTGCTGGAAGCCCAGCGGCTGGAAC

AGCGCACACGTTACGACATCGAAATGCTGGAGGCGACCGGCTCCTGCGCCGGTATCGAAAACTATTCGCGTTATCTCACC

GGCCGCAATCCCGGTGAGCCGCCGCCGACGCTGTTTGAATATATCCCTGATAATGCGCTGCTTTTTATTGACGAAAGCCA

CGTATCGGTTAGCCAGATCGGTGGCATGTATCGCGGCGACTTCAGGCGCAAGGCGACGCTGGCCGAATATGGCTTCCGCC

TTCCCTCCTGCATGGATAACCGCCCGTTGCGCTTTGAGGAATGGGATGCGATGCGGCCGCTGACGGTCGCAGTTTCGGCC

ACCCCCGGCTCGTGGGAAATGGAACAGGCCGGCGGCGTCTTCGCCGAACAGGTCATCCGCCCGACAGGACTCATCGATCC

GCCGGTCGAGGTGCGCTCCGCCCGCAGCCAGGTGGACGATGTTCTCGGCGAAATTCGCGAGACCGCCGCTAAGGGTTATC

GCACACTCTGCACCGTGCTGACCAAGCGCATGGCTGAAGACCTGACCGAATATCTGCACGAACAGGGCGTTCGCGTGCGT

TACATGCACTCGGATATCGACACGCTGGAACGCATCGAGATCATCCGCGACCTGCGCCTTGGTGCGTTCGACGTGCTTGT

CGGTATCAACCTTCTGCGCGAAGGCCTCGATATTCCCGAATGCGGTTTCGTCGCGATCCTCGATGCCGACAAGGAAGGCT

TCCTGCGTTCGGAAACTTCGCTGATCCAGACCATCGGCCGCGCCGCCCGTAACGTCGACGGCAAGGTCATCCTTTATGCC

GACAATATCACCGGCTCGATGAAGCGGGCGATGGAGGAAACCTCCCGCCGCCGCGAAAAGCAGATGGCCTATAACGCCGA

ACACGGCATCACGCCGGAATCGGTCAAGGCGAAGATCTCCGATATTCTTGATTCAGTTTATGAGCGTGATCACGTAAGGG

CCGATATTTCAGGCGTTTCCGGCAAAGGCTTCGCCGATGGCGGCCATCTGGTCGGCAACAATCTGCAGTCCCATCTCAAC

GCGCTGGAAAAATCCATGCGCGATGCCGCAGCCGATCTGGACTTCGAAAAAGCCGCCCGCCTGCGAGACGAAATCAAGCG

CCTCAAGGCCACCGAACTCGCCGTCATGGACGACCCGATGGCGAAGGAAGAGGCGAAATCGCTTGAGGGTGGCGGCAGAA

GCAAGAAAAAAGAAACGAACGCCCGCAACGGGTCGATCTCCCCTCTTGCAGGAGACATATCGGGCGGGACAGAGGACGGT

GCCGCTTCCGCAAACGAAAGTGGAAAATCTCTCTTCGCCAAACCTTCGCTGGACGAAATGGGTCCCGGCTCGGACACGGG

CAAGCCGCTGTTTCGCAGGAACACGCTGGACGAGATGACCGTTGGCCGCACCGAGAAGCCGGTGCGTGGCGAAGTTCCCG

GCAAACCCGAGACGGAAACCGGCAAACGTTTCTCACCGCTCATGGAAGGCCAACCTGAGCGAACCAAGGACGATCCCCGC

CCCCTCGTGCGCGGCAAGATCGGAGCGGGTTCCTATGAGGATGCCGGCGAACAGAAGCGCAAAAGCCGGACGAAGGGGAA

GACGGGGCGTCCGGGGCAGTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(607-710)

Type III restriction enzyme, res subunit (ResIII)

(180-305)

UvrB interaction domain (UvrB_inter)

(326-415)

Ultra-violet resistance protein B (UvrB)

(718-759)

UvrB/uvrC motif (UVR)

(799-830)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
uvrB	Streptococcus pneumoniae TIGR4	55.789	66.969	0.374
uvrB	Streptococcus pneumoniae R6	55.789	66.969	0.374
uvrB	Streptococcus pneumoniae D39	55.789	66.969	0.374

Detailed information NTG0281587