Detailed information NTG0281576

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AtA6_RS04415
• Genome accession: NZ_CP033027
• Coordinates: 876665..877942 (+)
• Length: 425 a.a.
• NCBI ID: WP_003512644.1
• Uniprot ID: A0A1B9V328
• Organism: Agrobacterium tumefaciens strain A6
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 871665..882942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AtA6_RS04395 (AtA6_08580)	-	872272..872640 (+)	369	WP_038490713.1	cupin domain-containing protein	-
AtA6_RS04400 (AtA6_08590)	-	872699..873952 (-)	1254	WP_038490716.1	cytochrome P450	-
AtA6_RS04405 (AtA6_08600)	-	874038..875285 (-)	1248	WP_038490719.1	sensor domain-containing diguanylate cyclase	-
AtA6_RS04410 (AtA6_08610)	clpP	875741..876373 (+)	633	WP_003496491.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AtA6_RS04415 (AtA6_08620)	clpX	876665..877942 (+)	1278	WP_003512644.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AtA6_RS04425 (AtA6_08630)	lon	878355..880772 (+)	2418	WP_038492788.1	endopeptidase La	-
AtA6_RS04430 (AtA6_08640)	hupB	881061..881336 (+)	276	WP_003496481.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46909.83 Da
• Isoelectric Point: 5.0788

>NTDB_id=281576 AtA6_RS04415 WP_003512644.1 876665..877942(+) (clpX) [Agrobacterium tumefaciens strain A6]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGIARPLYIYADRQEEKANVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=281576 AtA6_RS04415 WP_003512644.1 876665..877942(+) (clpX) [Agrobacterium tumefaciens strain A6]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATCCTCGACGAATACGTC
ATCGGCCAGAAGCAGGCGAAAAAGATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTTGCGCACGCCTCCAAGAA
TGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACGATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATTATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCGATCACGCGTGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTGGACAAGATCATCTCGGCCAGGGGCGAAAAGAC
CTCGATTGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTGCTTCGCGAACTGGAGCCGGAAG
ATCTGGTGAAATTCGGTCTTATTCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAGGACCTTGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTACCAGCGTCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCGTTGCGCGAGATTGCCCGCCGGGCGATTACCCGCAAGACGGGTGCCCGCGGTCTGCGCT
CGATCATGGAAAAGATCCTTCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTGATCTCCAAC
GATGTCGTCAGCGGCATCGCTCGCCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGGCCAATGTTTCGGCTTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

3D structure

• AlphaFold DB: A0A1B9V328

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.335	94.824	0.525