Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AtA6_RS04410 Genome accession   NZ_CP033027
Coordinates   875741..876373 (+) Length   210 a.a.
NCBI ID   WP_003496491.1    Uniprot ID   A0ABR5DBD2
Organism   Agrobacterium tumefaciens strain A6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 870741..881373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AtA6_RS04390 (AtA6_08570) - 870973..872256 (+) 1284 WP_035198148.1 O-acetylhomoserine aminocarboxypropyltransferase -
  AtA6_RS04395 (AtA6_08580) - 872272..872640 (+) 369 WP_038490713.1 cupin domain-containing protein -
  AtA6_RS04400 (AtA6_08590) - 872699..873952 (-) 1254 WP_038490716.1 cytochrome P450 -
  AtA6_RS04405 (AtA6_08600) - 874038..875285 (-) 1248 WP_038490719.1 sensor domain-containing diguanylate cyclase -
  AtA6_RS04410 (AtA6_08610) clpP 875741..876373 (+) 633 WP_003496491.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AtA6_RS04415 (AtA6_08620) clpX 876665..877942 (+) 1278 WP_003512644.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AtA6_RS04425 (AtA6_08630) lon 878355..880772 (+) 2418 WP_038492788.1 endopeptidase La -
  AtA6_RS04430 (AtA6_08640) hupB 881061..881336 (+) 276 WP_003496481.1 DNA-binding protein HupB -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23272.83 Da        Isoelectric Point: 6.1201

>NTDB_id=281575 AtA6_RS04410 WP_003496491.1 875741..876373(+) (clpP) [Agrobacterium tumefaciens strain A6]
MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT
AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE
VYVKHTGRTLEEVEKTLDRDHFMDADEAKDWGVIDKILTSRQEMEGAAAN

Nucleotide


Download         Length: 633 bp        

>NTDB_id=281575 AtA6_RS04410 WP_003496491.1 875741..876373(+) (clpP) [Agrobacterium tumefaciens strain A6]
ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTATGA
CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGACCGGTGGAAGACCAGATGGCCTCGCTCGTCTGCG
CGCAGCTGCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC
GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGCCCTGCCGTTTCGACGCTTTGCGTCGGCCAGGCCGCATCCAT
GGGCTCGCTGCTTCTGGCCGCTGGCGAAAAGGGAATGCGTTTCGCAACTCCGAACGCCCGCATCATGGTGCATCAGCCCT
CCGGCGGCTTCCAGGGGCAGGCTTCGGATATCGAGCGTCACGCCCGCGACATCATCAAAATGAAGCGTCGCCTTAATGAA
GTCTACGTGAAGCACACCGGCCGTACGCTGGAAGAGGTTGAAAAAACCCTTGATCGCGACCACTTCATGGATGCCGACGA
GGCCAAGGACTGGGGTGTGATCGACAAGATCCTCACCTCGCGCCAGGAAATGGAAGGCGCCGCCGCGAATTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

60

92.857

0.557
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.915

89.524

0.51
  clpP Lactococcus lactis subsp. cremoris KW2

52.105

90.476

0.471
  clpP Streptococcus mutans UA159

49.231

92.857

0.457
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.526

90.476

0.457
  clpP Streptococcus pyogenes JRS4

48.969

92.381

0.452
  clpP Streptococcus pyogenes MGAS315

48.969

92.381

0.452
  clpP Streptococcus thermophilus LMG 18311

48.454

92.381

0.448
  clpP Streptococcus thermophilus LMD-9

48.454

92.381

0.448
  clpP Streptococcus pneumoniae Rx1

48.705

91.905

0.448
  clpP Streptococcus pneumoniae D39

48.705

91.905

0.448
  clpP Streptococcus pneumoniae R6

48.705

91.905

0.448
  clpP Streptococcus pneumoniae TIGR4

48.705

91.905

0.448

Multiple sequence alignment