Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D9V55_RS01950 Genome accession   NZ_CP032989
Coordinates   406495..407127 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain W2-5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 401495..412127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS01925 yhfG 401627..401794 (+) 168 WP_000736860.1 YhfG family protein -
  D9V55_RS01930 fic 401784..402386 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  D9V55_RS01935 pabA 402418..402981 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  D9V55_RS01940 argD 403067..404287 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  D9V55_RS01945 yhfK 404354..406444 (-) 2091 WP_001345983.1 YccS/YhfK family putative transporter -
  D9V55_RS01950 crp 406495..407127 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  D9V55_RS01960 yhfA 407429..407833 (+) 405 WP_001148908.1 OsmC family protein -
  D9V55_RS01965 prkB 407888..408757 (-) 870 WP_001274684.1 phosphoribulokinase -
  D9V55_RS01970 yheU 408811..409029 (-) 219 WP_000907085.1 YheU family protein -
  D9V55_RS01975 yheT 409023..410045 (-) 1023 WP_000057405.1 hydrolase -
  D9V55_RS01980 yheS 410045..411958 (-) 1914 WP_023142954.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=281332 D9V55_RS01950 WP_000242755.1 406495..407127(-) (crp) [Escherichia coli strain W2-5]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=281332 D9V55_RS01950 WP_000242755.1 406495..407127(-) (crp) [Escherichia coli strain W2-5]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467