Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   D9V55_RS00190 Genome accession   NZ_CP032989
Coordinates   33922..34512 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain W2-5     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 28922..39512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS00155 emrD 29404..30588 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  D9V55_RS25720 ysdE 30670..30744 (+) 75 WP_211180519.1 protein YsdE -
  D9V55_RS00160 tisB 31007..31096 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  D9V55_RS00175 ivbL 31661..31759 (+) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  D9V55_RS00180 ilvB 31865..33553 (+) 1689 WP_000168480.1 acetolactate synthase large subunit -
  D9V55_RS00185 ilvN 33557..33847 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  D9V55_RS00190 letA 33922..34512 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  D9V55_RS00195 uhpB 34512..36014 (+) 1503 WP_001330988.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  D9V55_RS00200 uhpC 36024..37343 (+) 1320 WP_001358267.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  D9V55_RS00205 uhpT 37481..38872 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=281325 D9V55_RS00190 WP_000633668.1 33922..34512(+) (letA) [Escherichia coli strain W2-5]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=281325 D9V55_RS00190 WP_000633668.1 33922..34512(+) (letA) [Escherichia coli strain W2-5]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGCGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378