Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D9V56_RS05945 Genome accession   NZ_CP032986
Coordinates   1190704..1191441 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BE2-5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1185704..1196441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V56_RS05910 yfiL 1185862..1186227 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  D9V56_RS05915 aroF 1186437..1187507 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  D9V56_RS05920 tyrA 1187518..1188639 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  D9V56_RS05925 pheA 1188682..1189842 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  D9V56_RS05930 pheL 1189941..1189988 (-) 48 WP_010723158.1 phe operon leader peptide -
  D9V56_RS05935 raiA 1190092..1190433 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  D9V56_RS05945 comL 1190704..1191441 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  D9V56_RS05950 rluD 1191576..1192556 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D9V56_RS05955 yfiH 1192553..1193284 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  D9V56_RS05960 clpC 1193414..1195987 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=281269 D9V56_RS05945 WP_000197686.1 1190704..1191441(-) (comL) [Escherichia coli strain BE2-5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=281269 D9V56_RS05945 WP_000197686.1 1190704..1191441(-) (comL) [Escherichia coli strain BE2-5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376