Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D9V56_RS02055 Genome accession   NZ_CP032986
Coordinates   435762..436394 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain BE2-5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 430762..441394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V56_RS02030 yhfG 430894..431061 (+) 168 WP_000736860.1 YhfG family protein -
  D9V56_RS02035 fic 431051..431653 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  D9V56_RS02040 pabA 431685..432248 (+) 564 WP_085452727.1 aminodeoxychorismate synthase component 2 -
  D9V56_RS02045 argD 432334..433554 (+) 1221 WP_077492861.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  D9V56_RS02050 yhfK 433621..435711 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  D9V56_RS02055 crp 435762..436394 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  D9V56_RS02065 yhfA 436696..437100 (+) 405 WP_001148910.1 OsmC family protein -
  D9V56_RS02070 prkB 437155..438024 (-) 870 WP_001274680.1 phosphoribulokinase -
  D9V56_RS02075 yheU 438078..438296 (-) 219 WP_000907085.1 YheU family protein -
  D9V56_RS02080 yheT 438290..439312 (-) 1023 WP_001753125.1 hydrolase -
  D9V56_RS02085 yheS 439312..441225 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=281253 D9V56_RS02055 WP_000242755.1 435762..436394(-) (crp) [Escherichia coli strain BE2-5]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=281253 D9V56_RS02055 WP_000242755.1 435762..436394(-) (crp) [Escherichia coli strain BE2-5]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467