Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   At1D1460_RS08600 Genome accession   NZ_CP032926
Coordinates   1635199..1638165 (+) Length   988 a.a.
NCBI ID   WP_060723382.1    Uniprot ID   A0A822UZV6
Organism   Agrobacterium tumefaciens strain 1D1460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1630199..1643165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1460_RS08565 (At1D1460_16350) - 1630408..1630812 (+) 405 WP_003507644.1 DUF2946 family protein -
  At1D1460_RS08570 (At1D1460_16360) - 1630860..1632224 (+) 1365 WP_065695070.1 PepSY domain-containing protein -
  At1D1460_RS08575 (At1D1460_16370) - 1632293..1632769 (-) 477 WP_003507634.1 nuclear transport factor 2 family protein -
  At1D1460_RS08580 (At1D1460_16380) - 1632782..1633393 (-) 612 WP_060723333.1 NAD(P)-dependent oxidoreductase -
  At1D1460_RS08585 (At1D1460_16390) - 1633549..1633932 (+) 384 WP_060723334.1 helix-turn-helix domain-containing protein -
  At1D1460_RS08590 (At1D1460_16400) - 1634050..1634472 (-) 423 WP_077998890.1 GNAT family N-acetyltransferase -
  At1D1460_RS08595 (At1D1460_16410) - 1634579..1634932 (-) 354 WP_020009373.1 DMT family protein -
  At1D1460_RS08600 (At1D1460_16420) uvrB 1635199..1638165 (+) 2967 WP_060723382.1 excinuclease ABC subunit UvrB Machinery gene
  At1D1460_RS08605 (At1D1460_16430) - 1638247..1638780 (-) 534 WP_233282975.1 hypothetical protein -
  At1D1460_RS08610 (At1D1460_16440) - 1639037..1640005 (+) 969 WP_060723337.1 alpha/beta hydrolase family protein -
  At1D1460_RS08615 (At1D1460_16450) - 1640034..1640459 (-) 426 WP_060723338.1 DUF1801 domain-containing protein -
  At1D1460_RS08620 (At1D1460_16460) - 1640623..1641078 (+) 456 WP_060723339.1 PRC-barrel domain-containing protein -
  At1D1460_RS08625 (At1D1460_16470) - 1641237..1641845 (+) 609 WP_060723340.1 DUF922 domain-containing Zn-dependent protease -
  At1D1460_RS08630 (At1D1460_16480) - 1641853..1642455 (-) 603 WP_060723341.1 J domain-containing protein -

Sequence

Protein


Download         Length: 988 a.a.        Molecular weight: 108643.15 Da        Isoelectric Point: 5.6368

>NTDB_id=281228 At1D1460_RS08600 WP_060723382.1 1635199..1638165(+) (uvrB) [Agrobacterium tumefaciens strain 1D1460]
MARSPKNSTSSPSGFEEAPQSSFEGAPLSGSVSDWVKQLEAEAEASSVETQREIASKAGKHRKKIEIEARKDAEKAASKT
AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEDAANLAPGAVTATVDALSKLIESGNPLFKDGKLWTPHRPA
RPPKSEGGVTIRMASDYQPAGDQPTAINDLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY
SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY
TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK
TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDVEMLEATGSCAGIENYSRYLT
GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA
TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR
YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHVRADISGASGKGFADGGHLVGNNLQSHLN
ALEKSMRDAAADLDFEKAARLRDEIKRLKAAELATMDDPMAKEEARAIEGGGKNNRRSHLSISPPEGETSGRTEAGAAPN
ESGKSLFTKPSLDEMGPGSDAEKPLFRRNTLDEMTVGRTEKPVRSAVPDKPETESGKRFSPLMEGQPERATDDPRPLVRG
KIGAGSYEDAGEQKRKSRTKGKTGRPGR

Nucleotide


Download         Length: 2967 bp        

>NTDB_id=281228 At1D1460_RS08600 WP_060723382.1 1635199..1638165(+) (uvrB) [Agrobacterium tumefaciens strain 1D1460]
ATGGCCAGATCACCGAAAAACTCCACCTCCTCGCCCTCGGGCTTCGAGGAAGCTCCGCAATCGTCATTCGAAGGTGCGCC
GCTCAGCGGCAGCGTCTCCGATTGGGTGAAGCAGCTTGAGGCGGAAGCGGAGGCATCCTCCGTGGAAACCCAGCGCGAAA
TCGCCTCAAAGGCGGGCAAGCACCGCAAGAAGATCGAGATCGAAGCACGCAAGGACGCGGAGAAGGCCGCCTCGAAGACG
GCCAAGAACACCACGGCCTCCAAGACCGCGCGCGGTGTTTCCATCGGCGCATCGAGCGATCCGAAAACCCGCGCCGCCGC
CGGCCTCAATCCGGTCGCCGGTATGGACGTATCGCTGGAGGATGCCGCCAACCTCGCGCCGGGCGCCGTCACCGCAACGG
TGGACGCGCTGTCGAAGCTGATCGAGAGCGGCAATCCGTTGTTCAAGGACGGCAAGCTGTGGACGCCGCACCGCCCGGCC
CGGCCGCCGAAGTCCGAAGGCGGCGTTACCATCCGCATGGCCTCGGACTATCAGCCCGCAGGCGACCAGCCGACGGCCAT
CAACGACCTCGTGGAAGGCATCAATTCCGGCGAGCGCAGCCAGGTCCTGCTCGGCGTCACCGGCTCTGGCAAGACCTTCA
CCATGGCCAAGGTGATCGAGGCGACGCAGCGCCCGGCTGTCATCCTCGCCCCCAACAAGACGCTGGCCGCGCAGCTCTAT
TCGGAGTTCAAGAACTTCTTCCCCGACAATGCGGTGGAATATTTCGTCTCCTACTACGATTATTACCAGCCGGAAGCCTA
TGTGCCGCGCTCCGACACCTTCATCGAGAAAGAATCCTCGATCAACGAGCAGATCGACCGGATGCGCCACTCCGCCACTC
GCTCACTGCTGGAGCGCGACGACTGCATCATCGTCGCCTCGGTTTCCTGCATCTACGGTATCGGTTCGGTGGAGACCTAC
ACCGCCATGACCTTCCAGATGCAGGTCGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTCGTGGCCCAGCAATA
CAAACGCCGCGACATGGATTTCCAGCGCGGTTCGTTCCGCGTGCGCGGTGACACCATCGAAATTTTCCCCGCCCACCTTG
AGGATGCCGCCTGGCGCATCTCGATGTTCGGCGACGAGATCGATTCCATCACCGAATTCGACCCGCTGACCGGCCAGAAG
ACCGGCGACCTGCAATCCGTCAAGATCTACGCCAATTCGCACTATGTCACCCCGCGCCCGACGCTGAACGGCGCGATCAA
GTCGATCAAGGAAGAGCTGAAGGTCCGCCTCGCCGAACTGGAAAAGGCCGGACGTCTGCTGGAGGCCCAGCGGCTTGAGC
AGCGCACCCGCTATGATGTGGAAATGCTGGAGGCGACCGGCTCCTGCGCCGGCATCGAGAACTATTCGCGTTATCTCACC
GGCCGTAATCCCGGCGAGCCGCCGCCGACGCTGTTCGAATATATCCCTGATAACGCGCTGCTGTTCATCGACGAAAGCCA
CGTCTCCGTCAGCCAGATCGGCGGCATGTATCGCGGCGACTTCAGGCGTAAGGCGACGCTGGCCGAATACGGCTTCCGCC
TGCCCTCCTGCATGGACAATCGTCCGCTGCGCTTCGAGGAATGGGATGCCATGCGGCCGCTGACGGTCGCGGTTTCGGCT
ACCCCCGGCTCATGGGAGATGGAACAGGCCGGCGGCGTCTTTGCCGAACAGGTCATCCGCCCGACCGGCCTTATCGATCC
GCCGGTGGAGGTTCGTTCCGCCCGTAGCCAGGTGGACGATGTTCTCGGTGAAATCCGCGAGACAGCCGCCAAAGGCTATC
GCACCCTCTGCACCGTGCTGACGAAGCGCATGGCCGAGGACCTGACCGAATATCTGCACGAACAGGGCGTTCGCGTGCGT
TACATGCACTCGGATATCGACACGCTGGAGCGCATCGAGATCATCCGCGACCTGCGCCTCGGCGCTTTCGACGTGCTTGT
TGGTATCAACCTGTTGCGCGAAGGTCTCGATATTCCCGAATGCGGTTTCGTGGCGATCCTCGATGCCGACAAGGAAGGCT
TCCTGCGCTCCGAAACCTCACTGATTCAAACCATCGGCCGCGCCGCCCGTAACGTCGACGGTAAGGTCATTCTTTATGCC
GACAACATCACCGGCTCGATGAAGCGGGCGATGGAGGAAACCTCCCGCCGCCGCGAGAAGCAGATGGCCTATAACGCCGA
GCACGGCATCACGCCGGAATCGGTCAAGGCGAAGATCTCGGATATTCTTGATTCAGTTTATGAGCGCGATCACGTAAGGG
CCGATATATCAGGTGCTTCCGGCAAAGGCTTCGCCGATGGCGGCCATCTGGTCGGCAACAATCTCCAGTCCCATCTCAAC
GCGCTGGAAAAATCCATGCGCGACGCCGCGGCCGATCTCGACTTCGAAAAGGCCGCCCGCCTGCGCGACGAAATCAAACG
TCTCAAGGCCGCCGAACTCGCCACCATGGACGACCCGATGGCGAAGGAAGAGGCCCGCGCCATCGAAGGCGGTGGAAAAA
ACAACAGGCGCAGCCACTTGTCGATCTCCCCACCTGAGGGGGAGACATCCGGCAGGACGGAGGCGGGCGCCGCGCCGAAC
GAAAGCGGCAAATCCCTTTTCACCAAACCCTCACTGGATGAAATGGGCCCCGGCTCAGATGCGGAAAAACCGCTGTTCCG
CAGGAACACGCTGGACGAGATGACCGTGGGCAGAACCGAAAAGCCCGTGCGCAGCGCAGTACCAGACAAGCCCGAGACCG
AATCCGGCAAACGCTTCTCACCGCTCATGGAAGGCCAGCCGGAGCGTGCTACCGATGATCCGCGACCACTGGTGCGTGGC
AAGATCGGCGCGGGGTCCTATGAAGACGCCGGCGAGCAGAAGCGCAAAAGCCGGACGAAGGGCAAGACGGGTCGGCCGGG
ACGCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(181-305)

UvrB/uvrC motif (UVR)

(799-830)

Helicase conserved C-terminal domain (Helicase_C)

(607-710)

Ultra-violet resistance protein B (UvrB)

(718-759)

UvrB interaction domain (UvrB_inter)

(326-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UZV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.639

67.308

0.374
  uvrB Streptococcus pneumoniae R6

55.639

67.308

0.374
  uvrB Streptococcus pneumoniae D39

55.639

67.308

0.374