Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   At1D1108_RS07915 Genome accession   NZ_CP032921
Coordinates   1578939..1581920 (+) Length   993 a.a.
NCBI ID   WP_080798257.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 1D1108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573939..1586920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1108_RS07880 (At1D1108_15340) - 1573945..1574538 (+) 594 WP_003513035.1 hypothetical protein -
  At1D1108_RS07885 (At1D1108_15350) - 1574638..1575054 (+) 417 WP_065660777.1 DUF2946 family protein -
  At1D1108_RS07890 (At1D1108_15360) - 1575103..1576467 (+) 1365 WP_121556687.1 PepSY-associated TM helix domain-containing protein -
  At1D1108_RS07895 (At1D1108_15370) - 1576644..1577120 (-) 477 WP_111790748.1 nuclear transport factor 2 family protein -
  At1D1108_RS07900 (At1D1108_15380) - 1577133..1577744 (-) 612 WP_013636447.1 NAD(P)-dependent oxidoreductase -
  At1D1108_RS07905 (At1D1108_15390) - 1577899..1578282 (+) 384 WP_003513040.1 winged helix-turn-helix transcriptional regulator -
  At1D1108_RS07910 (At1D1108_15400) - 1578344..1578697 (-) 354 WP_003513041.1 DMT family protein -
  At1D1108_RS07915 (At1D1108_15410) uvrB 1578939..1581920 (+) 2982 WP_080798257.1 excinuclease ABC subunit UvrB Machinery gene
  At1D1108_RS07920 (At1D1108_15420) - 1581952..1582920 (+) 969 WP_121556688.1 alpha/beta hydrolase -
  At1D1108_RS07925 (At1D1108_15430) - 1582933..1583367 (-) 435 WP_025593973.1 DUF1801 domain-containing protein -
  At1D1108_RS07930 (At1D1108_15440) - 1583508..1583963 (+) 456 WP_003513045.1 PRC-barrel domain-containing protein -
  At1D1108_RS07935 (At1D1108_15450) - 1584121..1584732 (+) 612 WP_065702384.1 DUF922 domain-containing Zn-dependent protease -
  At1D1108_RS07940 (At1D1108_15460) - 1584752..1585354 (-) 603 WP_003513049.1 J domain-containing protein -
  At1D1108_RS07945 (At1D1108_15470) - 1585672..1586025 (+) 354 WP_003513050.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 993 a.a.        Molecular weight: 109078.81 Da        Isoelectric Point: 5.6520

>NTDB_id=281193 At1D1108_RS07915 WP_080798257.1 1578939..1581920(+) (uvrB) [Agrobacterium tumefaciens strain 1D1108]
MARSPKNSKPSNSGFEEAPQSSFEGAPLSGSVADWVKQLEAEAEAGSVETQREVASKAGKHRKKIEIEARKEAEKAANKT
AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTPHRPA
RPPKSEGGVTIRMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY
SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY
TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK
TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELRVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLT
GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA
TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR
YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQSHLN
ALEKSMRDAAADLDFEKAARLRDEIKRLKATELAVMDDPMAKEEAKSLEGGGRSKKKETSARNGSISPIAGDISGVTEDG
AASANESGKSLFAKPSLDEMGPGSDTGKPLFRRNTLDEMTVGRTEKPVRGEVPGKPETETGKRFSPLMEGQPERTKDDPR
PLVRGKIGAGSYEDAGEQKRKSRTKGKTGRPGR

Nucleotide


Download         Length: 2982 bp        

>NTDB_id=281193 At1D1108_RS07915 WP_080798257.1 1578939..1581920(+) (uvrB) [Agrobacterium tumefaciens strain 1D1108]
ATGGCCAGATCACCCAAAAATTCCAAACCCTCGAATTCCGGCTTCGAGGAAGCTCCGCAATCGTCGTTCGAAGGCGCGCC
GCTCAGCGGCAGCGTTGCCGATTGGGTAAAGCAGCTCGAGGCGGAAGCCGAAGCCGGCTCGGTGGAAACCCAGCGCGAAG
TCGCCTCGAAAGCTGGCAAGCACCGCAAGAAGATCGAGATCGAAGCGCGCAAGGAAGCGGAAAAAGCGGCCAACAAAACG
GCTAAAAACACCACGGCTTCCAAGACAGCGCGCGGCGTTTCCATCGGCGCGTCGAGCGATCCAAAAACCCGCGCCGCCGC
CGGTCTCAATCCAGTGGCTGGCATGGACGTTTCCCTGGAGGAGGCGGCCAATCTCGCACCGGGTGCCGTCACCGCCACCG
TCGAGGCGCTATCGGCGCTTATCGAGAGCGGCAATCCGCTGTTCAAGGACGGCAAGATGTGGACGCCGCACCGGCCGGCC
CGTCCGCCTAAATCCGAAGGCGGCGTTACAATCCGCATGGACTCGGAGTATCAACCGGCAGGCGACCAGCCAACGGCGAT
TGCCGATCTCGTGGAAGGCATCAATTCCGGCGAGCGCAGCCAGGTCCTGCTCGGTGTCACCGGCTCCGGCAAAACCTTCA
CCATGGCCAAGGTGATCGAGGCAACCCAGCGCCCGGCCGTCATCCTTGCGCCCAACAAGACGCTGGCCGCACAGCTCTAT
TCCGAGTTCAAGAACTTCTTCCCCGACAATGCGGTAGAGTACTTCGTCTCATATTACGATTATTATCAGCCGGAAGCCTA
TGTGCCGCGCTCCGACACCTTCATCGAGAAGGAATCCTCGATCAACGAACAGATCGACCGGATGCGTCACTCCGCGACCC
GCTCGCTGCTGGAACGCGACGACTGCATCATCGTCGCTTCGGTTTCCTGCATCTATGGTATCGGCTCGGTGGAAACCTAT
ACAGCCATGACCTTCCAGATGCAGGTGGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTTGTGGCCCAGCAATA
CAAGCGCCGCGACATGGATTTCCAGCGCGGCTCCTTCCGCGTGCGCGGCGATACCATCGAAATCTTCCCCGCCCACCTTG
AGGATGCCGCCTGGCGCATCTCGATGTTCGGCGACGAAATCGATTCCATTACCGAATTCGACCCGCTGACCGGCCAGAAA
ACCGGCGATCTGCAATCCGTCAAGATCTACGCCAATTCGCACTATGTCACCCCGCGCCCGACGCTGAACGGCGCGATCAA
GTCGATCAAGGAAGAGCTAAGGGTCCGCCTCGCCGAGCTGGAAAAGGCGGGACGTCTGCTGGAAGCCCAGCGGCTGGAAC
AGCGCACGCGTTACGACATCGAAATGCTGGAGGCGACCGGCTCCTGCGCCGGTATCGAAAACTATTCGCGTTATCTAACC
GGCCGCAATCCCGGTGAGCCGCCGCCGACGCTGTTTGAATATATCCCTGATAATGCGCTGCTTTTTATTGACGAAAGCCA
CGTCTCGGTTAGCCAGATCGGTGGCATGTATCGCGGCGACTTCAGGCGCAAGGCGACGCTGGCCGAATATGGCTTCCGCC
TTCCCTCCTGCATGGATAACCGCCCGTTGCGCTTTGAGGAATGGGATGCGATGCGGCCGCTGACGGTCGCGGTTTCGGCC
ACCCCCGGCTCGTGGGAAATGGAACAGGCCGGCGGCGTCTTCGCCGAACAGGTCATCCGCCCGACAGGACTCATCGATCC
GCCGGTCGAGGTGCGCTCCGCCCGCAGCCAGGTGGACGATGTTCTCGGCGAAATTCGCGAGACCGCCGCTAAGGGTTACC
GCACGCTCTGCACCGTGCTGACCAAGCGCATGGCTGAAGACCTGACCGAATATCTGCACGAACAGGGCGTTCGCGTGCGT
TACATGCACTCGGATATCGACACGCTGGAACGCATCGAGATCATCCGCGACCTGCGCCTTGGTGCGTTCGACGTGCTTGT
CGGTATTAACCTTCTGCGCGAAGGCCTCGATATTCCCGAATGCGGTTTCGTCGCGATCCTCGATGCCGACAAGGAAGGCT
TCCTGCGTTCGGAAACTTCGCTGATCCAGACCATCGGCCGCGCCGCCCGTAACGTCGACGGCAAGGTCATCCTCTATGCC
GACAATATCACCGGCTCGATGAAGCGGGCGATGGAGGAAACCTCCCGCCGCCGCGAAAAGCAGATGGCCTATAACGCCGA
ACACGGCATCACGCCGGAATCGGTCAAGGCGAAGATCTCCGATATTCTTGATTCAGTTTATGAGCGTGATCACGTAAGGG
CCGATATTTCAGGCGTTTCCGGCAAAGGCTTCGCCGATGGCGGCCATCTGGTCGGCAACAATCTGCAGTCCCATCTCAAC
GCGCTGGAAAAATCCATGCGCGATGCCGCAGCCGATCTGGACTTCGAAAAAGCCGCCCGCCTGCGTGACGAAATCAAGCG
CCTCAAGGCCACCGAACTCGCCGTCATGGACGACCCGATGGCGAAGGAAGAGGCGAAATCGCTTGAGGGCGGCGGCAGAA
GCAAGAAAAAAGAAACGAGCGCCCGCAACGGGTCGATCTCCCCTATTGCAGGAGACATATCCGGCGTGACAGAGGACGGT
GCCGCTTCCGCAAACGAAAGTGGAAAATCTCTCTTCGCCAAACCTTCGCTGGACGAAATGGGTCCCGGCTCGGACACGGG
CAAGCCGCTGTTCCGCAGGAACACGCTGGACGAGATGACCGTTGGCCGCACCGAGAAGCCGGTGCGTGGCGAAGTTCCCG
GCAAACCCGAGACGGAAACCGGCAAACGTTTCTCACCGCTCATGGAAGGCCAGCCTGAGCGAACCAAGGACGATCCCCGC
CCCCTCGTGCGCGGCAAGATCGGAGCGGGTTCCTATGAGGATGCCGGCGAACAGAAGCGCAAAAGCCGGACGAAGGGGAA
GACGGGGCGTCCCGGTCGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(607-710)

Type III restriction enzyme, res subunit (ResIII)

(180-305)

UvrB interaction domain (UvrB_inter)

(326-415)

Ultra-violet resistance protein B (UvrB)

(718-759)

UvrB/uvrC motif (UVR)

(799-830)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.789

66.969

0.374
  uvrB Streptococcus pneumoniae R6

55.789

66.969

0.374
  uvrB Streptococcus pneumoniae D39

55.789

66.969

0.374

Multiple sequence alignment