Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D4H43_RS01815 Genome accession   NZ_CP032911
Coordinates   353395..355371 (+) Length   658 a.a.
NCBI ID   WP_139543817.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-A-EK3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 348395..360371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H43_RS01795 ggt 348880..350583 (+) 1704 WP_139543816.1 gamma-glutamyltransferase -
  D4H43_RS01805 - 350861..351631 (+) 771 WP_000540104.1 HP1117 family Sel1-like repeat protein -
  D4H43_RS08345 - 351868..352029 (-) 162 WP_201737112.1 hypothetical protein -
  D4H43_RS01810 - 352037..353017 (+) 981 Protein_345 DUF3519 domain-containing protein -
  D4H43_RS01815 uvrB 353395..355371 (+) 1977 WP_139543817.1 excinuclease ABC subunit UvrB Machinery gene
  D4H43_RS01820 - 355382..356215 (-) 834 WP_139543818.1 outer membrane protein -
  D4H43_RS01825 purB 356281..357603 (-) 1323 WP_139543819.1 adenylosuccinate lyase -
  D4H43_RS01830 - 357713..358657 (-) 945 WP_000238160.1 thiamine pyrophosphate-dependent enzyme -
  D4H43_RS01835 - 358670..359893 (-) 1224 WP_024114632.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  D4H43_RS01840 - 359903..360295 (-) 393 WP_000656174.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 76048.51 Da        Isoelectric Point: 6.7308

>NTDB_id=281015 D4H43_RS01815 WP_139543817.1 353395..355371(+) (uvrB) [Helicobacter pylori strain 19-A-EK3]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPTLIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERMAVFDALERNEIRRLDSV
MLYAASQFAVGSERLNIAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRTKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAQLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=281015 D4H43_RS01815 WP_139543817.1 353395..355371(+) (uvrB) [Helicobacter pylori strain 19-A-EK3]
ATGCCTTTATTTGATTTAAAAAGCCCTTATCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCTTTAACAAAAAGCTT
GAAAAATAACAACCATTATCAAACTTTAGTGGGGGTTACAGGGAGCGGTAAGACTTATACGATGGCCAATATCATCGCTC
AAACCAATAAACCCACTCTGATCATGAGCCATAATAAGACCTTGTGTGCGCAGCTCTATAGCGAGTTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGACTACTACCAGCCTGAAAGCTATATCCCTAGAAGGGATTTGTT
CATTGAAAAAGACAGCTCTATTAATGATGATTTAGAGCGTTTGAGATTGAGCGCGGCCACCTCACTTTTAGGTTATGATG
ATGTGATCGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAACGCGCTTATAAGAGCTTTTTACTCAAGCTGGTAGAAATGGGCTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACGGGGGAGTGCGTGGATATTTTCCCTGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATGGCTGTCTTTGACGCTTTAGAAAGAAATGAAATCAGGCGCTTGGATTCTGTC
ATGCTTTATGCAGCCAGTCAGTTTGCCGTAGGGAGTGAGAGATTAAATATAGCCATTAAAAGCATTGAAGATGAACTCGC
TTTAAGGTTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGTCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGTGCGACCGGTGTGTGTAAGGGTATTGAAAATTACGCGCGCCATTTTACAGGCAAAGCCCCTAATGAAACG
CCTTTTTGTTTGTTTGATTATTTAGGGATTTTTGAGCGGGAGTTTTTAGTCATTGTGGATGAAAGCCATGTGAGTTTGCC
GCAGTTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAATTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTCGAATTAGAGCTTTCCAAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTATTTGATGAAATCAAGTTAGTGGTGGCCAGAGATGAAAGGGTGCTAATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCTGAATGGGGTTTGAAAGCGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGAAATCACATCATCCGCTCTTTAAGGCTTAAGGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAGGGGTTGGATTTGCCTGAAGTCTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATCACTAGTTACAGGCGCACCAAACAAGAAGAGTTCAATAAAATCCATAATATCAC
CCCTAAAACCGTTACTCGTGCTTTAGAAGAGGAATTGAAATTAAGAGACGATGAGATTAGAATCGCTAAAGCCTTAAAAA
AGGACAAAATGCCTAAAAGTGAAAGGGAAAAAATCATTAAAGAATTGGATAAAAAAATGCGAGAATGTGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGATGAAATCGCTCAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(445-547)

UvrB/uvrC motif (UVR)

(623-657)

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB interaction domain (UvrB_inter)

(159-248)

Type III restriction enzyme, res subunit (ResIII)

(15-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.321

100

0.497
  uvrB Streptococcus pneumoniae D39

49.321

100

0.497
  uvrB Streptococcus pneumoniae TIGR4

49.321

100

0.497