Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C7H73_RS04380 Genome accession   NZ_CP027792
Coordinates   966721..968163 (-) Length   480 a.a.
NCBI ID   WP_106845528.1    Uniprot ID   A0A2P1NIX0
Organism   Pulveribacter suum strain SC2-7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 961721..973163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H73_RS04365 (C7H73_04350) - 961725..962894 (-) 1170 WP_106845526.1 ribonucleotide-diphosphate reductase subunit beta -
  C7H73_RS04370 (C7H73_04355) - 963032..965899 (-) 2868 WP_106845527.1 ribonucleoside-diphosphate reductase subunit alpha -
  C7H73_RS04375 (C7H73_04360) ampD 966147..966737 (-) 591 WP_106847531.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  C7H73_RS04380 (C7H73_04365) pilR 966721..968163 (-) 1443 WP_106845528.1 sigma-54 dependent transcriptional regulator Regulator
  C7H73_RS04385 (C7H73_04370) - 968174..969862 (-) 1689 WP_227001414.1 sensor histidine kinase KdpD -
  C7H73_RS04390 (C7H73_04375) - 969870..970088 (-) 219 WP_405124780.1 PP0621 family protein -
  C7H73_RS04395 (C7H73_04380) - 970088..970885 (-) 798 WP_106845529.1 inner membrane protein YpjD -
  C7H73_RS04400 (C7H73_04385) ffh 970977..972359 (+) 1383 WP_106845530.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 51845.06 Da        Isoelectric Point: 6.3562

>NTDB_id=280788 C7H73_RS04380 WP_106845528.1 966721..968163(-) (pilR) [Pulveribacter suum strain SC2-7]
MNTHTAASILVVDDEPDLRTLYELTLLREGYRVEAAATVAEAREQLAAQKFDVVISDMRLPDGFGMELLHDLRQQQRRER
CVVMTAYGSADNAVEALRAGAFDYLTKPVDLKQFRAVVASAIQGIGGVPAPQRGARVRPAALASQDAMGRLIGESAPMRA
VKDRIAKVARSMAPVLVRGESGTGKELVARALHASSQRASGPLVAVNCGAIPENLLEAEFFGARKGSYTGASQDREGFFQ
AARGGTLFLDEIGDLPLAMQSKLLRAIQERSVRPLGSTQEEAVDVRIVSATHRDLAADVLGGRFRQDLYYRLNVIEVLVP
PLRERREDLPALCAALLARIQEDSHIAVPPLTDTAMQQLARHPLTGNVRELENLLHRAVALSDGRELHIEDPAPGTACPP
GSAPGAPAAASAAACEMPGDLQAWLDQQEREILVRALHESGFNRTAAAARLGISLRQIRYRIARLDIAMPQGGDEHGDAQ

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=280788 C7H73_RS04380 WP_106845528.1 966721..968163(-) (pilR) [Pulveribacter suum strain SC2-7]
ATGAACACCCATACCGCCGCATCCATCCTCGTCGTGGACGACGAACCCGACCTGCGCACGCTGTACGAGCTGACGCTGCT
GCGCGAGGGCTACCGCGTGGAGGCCGCCGCCACCGTCGCCGAGGCACGCGAGCAGCTGGCGGCGCAGAAATTCGACGTGG
TCATCAGCGACATGCGCCTGCCCGACGGCTTCGGCATGGAGCTGCTGCACGACCTGCGCCAGCAGCAGCGGCGCGAGCGC
TGCGTGGTCATGACCGCCTACGGCTCGGCAGACAACGCGGTGGAGGCGTTGCGTGCCGGCGCCTTCGACTACCTCACCAA
GCCGGTGGACCTGAAGCAGTTTCGCGCTGTGGTGGCCTCCGCCATCCAGGGCATCGGCGGGGTGCCGGCGCCGCAGCGGG
GTGCCCGCGTCAGGCCCGCGGCACTGGCGTCGCAGGACGCAATGGGGCGCCTGATCGGCGAATCCGCTCCCATGCGCGCC
GTCAAGGACCGCATCGCCAAGGTGGCGCGCAGCATGGCGCCCGTGCTGGTACGCGGCGAGTCAGGCACCGGCAAGGAGCT
GGTGGCGCGGGCGCTGCACGCCAGCAGCCAGCGCGCCAGCGGGCCGCTGGTCGCCGTCAATTGCGGCGCCATTCCCGAAA
ATCTGCTGGAGGCCGAGTTCTTCGGCGCCCGCAAGGGCTCCTACACCGGCGCCAGCCAGGACCGGGAAGGCTTCTTCCAG
GCGGCGCGCGGAGGCACCTTGTTTTTGGACGAGATCGGCGACCTGCCGCTGGCCATGCAGTCCAAGCTGCTGCGTGCCAT
CCAGGAGCGCAGCGTGCGCCCGCTGGGCTCCACCCAAGAGGAAGCGGTGGACGTGCGCATCGTCAGCGCCACGCACCGCG
ACCTGGCCGCCGACGTGCTGGGCGGGCGCTTCCGCCAGGATCTGTACTACCGCCTGAACGTCATCGAAGTGCTGGTGCCG
CCGCTGCGCGAGCGCCGCGAGGATCTTCCGGCCCTGTGCGCGGCGCTGCTGGCGCGCATCCAGGAAGACAGCCACATCGC
CGTGCCGCCCCTGACGGACACGGCCATGCAGCAGCTGGCGCGCCACCCGCTGACCGGCAACGTGCGCGAGCTGGAAAACC
TGCTGCACCGCGCCGTGGCACTGAGCGACGGGCGCGAACTGCACATTGAAGATCCCGCGCCCGGCACCGCCTGCCCGCCC
GGCAGCGCCCCTGGCGCGCCCGCGGCAGCCAGCGCCGCAGCGTGCGAAATGCCGGGCGACCTGCAGGCCTGGCTGGACCA
GCAGGAGCGCGAAATCCTCGTGCGCGCGCTGCACGAATCCGGCTTCAACCGCACGGCAGCCGCGGCGCGCCTGGGCATCA
GCCTGCGGCAAATCCGCTACCGCATCGCGCGGCTGGACATCGCCATGCCCCAGGGCGGCGATGAACATGGCGACGCGCAG
TAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(151-317)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(425-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P1NIX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.873

95.417

0.485
  pilR Acinetobacter baumannii strain A118

40.812

97.5

0.398

Multiple sequence alignment