Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   D4J22_RS02310 Genome accession   NZ_CP032905
Coordinates   453123..455048 (-) Length   641 a.a.
NCBI ID   WP_139546975.1    Uniprot ID   -
Organism   Helicobacter pylori strain 26-A-EK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 448123..460048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J22_RS02300 - 448220..450793 (-) 2574 WP_201736871.1 DNA translocase FtsK -
  D4J22_RS02305 addB 450790..453126 (-) 2337 WP_139546974.1 ATP-dependent deoxyribonuclease AddB -
  D4J22_RS02310 recP/tkt 453123..455048 (-) 1926 WP_139546975.1 transketolase Machinery gene
  D4J22_RS02315 - 455095..455937 (-) 843 WP_139546976.1 bifunctional riboflavin kinase/FAD synthetase -
  D4J22_RS02320 - 455903..456610 (-) 708 WP_139546977.1 TlyA family RNA methyltransferase -
  D4J22_RS02325 - 456610..457125 (-) 516 WP_000523542.1 hypothetical protein -
  D4J22_RS02330 pyrB 457192..458115 (+) 924 WP_139546978.1 aspartate carbamoyltransferase -
  D4J22_RS02335 hofB 458396..459835 (+) 1440 WP_139546979.1 outer membrane beta-barrel protein HofB -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70610.90 Da        Isoelectric Point: 6.6406

>NTDB_id=280770 D4J22_RS02310 WP_139546975.1 453123..455048(-) (recP/tkt) [Helicobacter pylori strain 26-A-EK1]
MRLSNADLERLKSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHYTEGIEITTGPLGQGFANAVGFSMASQYAQTLLDKEVITHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFVAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVRGASLEALWEKSLNPKTKE
KIHALKDFDFSAIHYPTFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLNAPSALILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKILERENIPT
QVVSAPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGNSAKGDKLFEKFGFSVENITIQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=280770 D4J22_RS02310 WP_139546975.1 453123..455048(-) (recP/tkt) [Helicobacter pylori strain 26-A-EK1]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCGAATGCGCTTCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTAAACCTAA
ACCCCACTAACCCTAAATGGCTCAATAGGGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTGGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACTACACCGAAGGCATTGAGATCACGACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAACCCTTTTGGATAAAGAAGTGATTACTCATAAAGTCTATTGTTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCATCTCAACCTGAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATCAATATTAGTTTTAGCGAACAGGTTAAGATGCGGTTTGTTGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGATTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGTTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTAATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGCTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAACCCTAAAACAAAAGAA
AAAATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCCATTACCCCACCTTTAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTAGGGGGGAGCGCGGATCTAGCCCCCT
CTAACAACACGCAGTTGAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTATTT
AATGCCCAGCATTCGTTTGAGCGCTTTAATGAAATTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCAACGCACCAACCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTATGCTTTCAGGCCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAACGCTCCTAGCGCTCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCATTCTAAAGATCCCATTA
TCACGCTCGTTGCGAGCGGGAGCGAAGTGTCTTTGGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCGCCTTGCTTTGATTTGTTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAGGGCAAAGT
CTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAATT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCATTCAAGCTAAAAGGTTGCTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.707

100

0.413

Multiple sequence alignment