Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M53_RS20020 Genome accession   NZ_CP027789
Coordinates   3768157..3768891 (-) Length   244 a.a.
NCBI ID   WP_021837755.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TAB7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3763157..3773891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M53_RS19985 (C7M53_19960) fliW 3763308..3763739 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  C7M53_RS19990 (C7M53_19965) - 3763761..3764327 (-) 567 WP_003185702.1 DUF6470 family protein -
  C7M53_RS19995 (C7M53_19970) flgL 3764377..3765288 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  C7M53_RS20000 (C7M53_19975) flgK 3765299..3766822 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  C7M53_RS20005 (C7M53_19980) - 3766838..3767314 (-) 477 WP_003185711.1 flagellar protein FlgN -
  C7M53_RS20010 (C7M53_19985) flgM 3767333..3767599 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M53_RS20015 (C7M53_19990) - 3767679..3768098 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  C7M53_RS20020 (C7M53_19995) comFC 3768157..3768891 (-) 735 WP_021837755.1 amidophosphoribosyltransferase Machinery gene
  C7M53_RS20025 (C7M53_20000) - 3768848..3769132 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  C7M53_RS20030 (C7M53_20005) comFA 3769187..3770581 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  C7M53_RS20035 (C7M53_20010) - 3770703..3771545 (-) 843 WP_003185726.1 DegV family protein -
  C7M53_RS20040 (C7M53_20015) degU 3771665..3772354 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  C7M53_RS20045 (C7M53_20020) degS 3772436..3773593 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27845.23 Da        Isoelectric Point: 9.4827

>NTDB_id=280768 C7M53_RS20020 WP_021837755.1 3768157..3768891(-) (comFC) [Bacillus licheniformis strain TAB7]
MKTRFAQAIEEGGNKLNCLICAAPLLHSFSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=280768 C7M53_RS20020 WP_021837755.1 3768157..3768891(-) (comFC) [Bacillus licheniformis strain TAB7]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTTTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment