Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D4K04_RS06300 Genome accession   NZ_CP032904
Coordinates   1296412..1298388 (-) Length   658 a.a.
NCBI ID   WP_139522343.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-A-EK5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291412..1303388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K04_RS06275 - 1291476..1291868 (+) 393 WP_000656174.1 4Fe-4S dicluster domain-containing protein -
  D4K04_RS06280 - 1291878..1293101 (+) 1224 WP_000124344.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  D4K04_RS06285 - 1293114..1294058 (+) 945 WP_001922036.1 thiamine pyrophosphate-dependent enzyme -
  D4K04_RS06290 purB 1294168..1295490 (+) 1323 WP_139522145.1 adenylosuccinate lyase -
  D4K04_RS06295 - 1295555..1296388 (+) 834 WP_139522146.1 outer membrane protein -
  D4K04_RS06300 uvrB 1296412..1298388 (-) 1977 WP_139522343.1 excinuclease ABC subunit UvrB Machinery gene
  D4K04_RS08305 - 1298429..1299045 (-) 617 Protein_1197 hypothetical protein -
  D4K04_RS06315 - 1299086..1299934 (-) 849 Protein_1198 DUF3519 domain-containing protein -
  D4K04_RS08200 - 1299903..1300103 (+) 201 Protein_1199 hypothetical protein -
  D4K04_RS06320 - 1300340..1301110 (-) 771 WP_000540107.1 HP1117 family Sel1-like repeat protein -
  D4K04_RS06325 ggt 1301353..1303056 (-) 1704 WP_139522148.1 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75997.49 Da        Isoelectric Point: 6.7808

>NTDB_id=280753 D4K04_RS06300 WP_139522343.1 1296412..1298388(-) (uvrB) [Helicobacter pylori strain 169-A-EK5]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANVIAQTNKPTLIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKHAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAKLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=280753 D4K04_RS06300 WP_139522343.1 1296412..1298388(-) (uvrB) [Helicobacter pylori strain 169-A-EK5]
ATGCCTTTATTTGATTTAAAAAGCCCTTATCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCTTTAACGAAAAGCTT
GAAAAATAACAACCATTATCAAACTCTAGTGGGGGTTACAGGGAGCGGTAAGACTTACACGATGGCTAATGTCATCGCTC
AAACCAATAAACCCACTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTTTATAGCGAGTTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAAAGCTATATCCCTAGGAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAACGATGATTTAGAGCGTTTGAGATTGAGCGCAACCACCTCGCTTTTAGGTTATGATG
ATGTGATCGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATCTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCACGCTTACAAGAGCTTTTTATTAAAGCTAGTGGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACTGGGGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCTGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGTGAGAGGTTGAATTTAGCCATTAAAAGCATTGAAGATGAGCTCGC
TTTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCGACCGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTTACGGGTAAAGCCCCTAACGAAACG
CCTTTTTGCTTGTTTGATTATTTGGGGATATTTGAGCGGGAGTTTTTAGTCATTGTAGATGAAAGCCATGTGAGTTTGCC
GCAATTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAATTAGAGCTTTCCAAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAGCAGGTCCAGGATTTATTTGATGAAATCAAGTTAGTGGTGGCTAGAGATGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCTGAATGGGGCTTGAAAGTGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGGAATCACATCATCCGCTCTTTAAGGCTTAAAGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAGGGGCTGGATTTGCCTGAAGTCTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATCACCAGTTATAGGCGTGCCAAACAAGAAGAGTTCAATAAAATTCATAATATCAC
CCCCAAAACCGTTACTCGCGCTTTAGAAGAGGAATTGAAATTAAGAGACGATGAGATTAGAATCGCTAAAGCCTTAAAAA
AGGACAAAATGCCTAAAAGTGAAAGGGAAAAAATCATTAAAGAATTGGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGCTTGAGAGACGAAATCGCAAAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-248)

UvrB/uvrC motif (UVR)

(623-657)

Ultra-violet resistance protein B (UvrB)

(554-595)

Helicase conserved C-terminal domain (Helicase_C)

(445-547)

Type III restriction enzyme, res subunit (ResIII)

(15-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.925

100

0.503
  uvrB Streptococcus pneumoniae TIGR4

49.925

100

0.503
  uvrB Streptococcus pneumoniae D39

49.925

100

0.503