Detailed information NTG0280710

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4K20_RS07655
• Genome accession: NZ_CP032903
• Coordinates: 1569731..1570867 (-)
• Length: 378 a.a.
• NCBI ID: WP_139545659.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 173-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1564731..1575867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4K20_RS07635	-	1565423..1565788 (+)	366	WP_139545655.1	hypothetical protein	-
D4K20_RS08570	-	1565899..1566110 (+)	212	Protein_1456	anthranilate synthase component I	-
D4K20_RS07640	-	1566138..1567070 (-)	933	WP_139545656.1	GDP-L-fucose synthase	-
D4K20_RS07645	gmd	1567063..1568208 (-)	1146	WP_139545657.1	GDP-mannose 4,6-dehydratase	-
D4K20_RS07650	-	1568249..1569661 (-)	1413	WP_139545658.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4K20_RS07655	comB10	1569731..1570867 (-)	1137	WP_139545659.1	DNA type IV secretion system protein ComB10	Machinery gene
D4K20_RS07660	comB9	1570860..1571843 (-)	984	WP_139545660.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4K20_RS07665	comB8	1571843..1572586 (-)	744	WP_139545661.1	virB8 family protein	Machinery gene
D4K20_RS07670	comB7	1572583..1572696 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4K20_RS07675	comB6	1572712..1573767 (-)	1056	WP_139545776.1	P-type conjugative transfer protein TrbL	Machinery gene
D4K20_RS07680	-	1573775..1574770 (-)	996	WP_139545777.1	PDZ domain-containing protein	-
D4K20_RS07685	-	1574770..1575063 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4K20_RS07690	panD	1575074..1575424 (-)	351	WP_000142269.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42217.90 Da
• Isoelectric Point: 9.9637

>NTDB_id=280710 D4K20_RS07655 WP_139545659.1 1569731..1570867(-) (comB10) [Helicobacter pylori strain 173-A-EK1]
MNKWLKGVLIFIGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTKTTPPKKDFSPKQLDLLAARITPFKQGPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=280710 D4K20_RS07655 WP_139545659.1 1569731..1570867(-) (comB10) [Helicobacter pylori strain 173-A-EK1]
ATGAATAAGTGGCTTAAGGGGGTGCTTATTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAGTACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAAAACAACCCCCCCTAAAAAAGATTTTTCTCCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTGAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.825	100	0.968