Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4K20_RS07665 Genome accession   NZ_CP032903
Coordinates   1571843..1572586 (-) Length   247 a.a.
NCBI ID   WP_139545661.1    Uniprot ID   -
Organism   Helicobacter pylori strain 173-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1566843..1577586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K20_RS07645 gmd 1567063..1568208 (-) 1146 WP_139545657.1 GDP-mannose 4,6-dehydratase -
  D4K20_RS07650 - 1568249..1569661 (-) 1413 WP_139545658.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4K20_RS07655 comB10 1569731..1570867 (-) 1137 WP_139545659.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4K20_RS07660 comB9 1570860..1571843 (-) 984 WP_139545660.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4K20_RS07665 comB8 1571843..1572586 (-) 744 WP_139545661.1 virB8 family protein Machinery gene
  D4K20_RS07670 comB7 1572583..1572696 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4K20_RS07675 comB6 1572712..1573767 (-) 1056 WP_139545776.1 P-type conjugative transfer protein TrbL Machinery gene
  D4K20_RS07680 - 1573775..1574770 (-) 996 WP_139545777.1 PDZ domain-containing protein -
  D4K20_RS07685 - 1574770..1575063 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4K20_RS07690 panD 1575074..1575424 (-) 351 WP_000142269.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28770.02 Da        Isoelectric Point: 8.9546

>NTDB_id=280712 D4K20_RS07665 WP_139545661.1 1571843..1572586(-) (comB8) [Helicobacter pylori strain 173-A-EK1]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=280712 D4K20_RS07665 WP_139545661.1 1571843..1572586(-) (comB8) [Helicobacter pylori strain 173-A-EK1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGCATTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGTGT
GTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATTGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCACCGACTAACAGGAATGATTGA

Domains

Predicted by InterProScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment