Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7K43_RS10475 Genome accession   NZ_CP027786
Coordinates   2190308..2190811 (-) Length   167 a.a.
NCBI ID   WP_124006802.1    Uniprot ID   A0AAN4UC75
Organism   Tetragenococcus koreensis strain KCTC 3924     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2185308..2195811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K43_RS10455 (C7K43_10475) dnaB 2186473..2187840 (-) 1368 WP_124006798.1 replicative DNA helicase -
  C7K43_RS10460 (C7K43_10480) rplI 2187937..2188389 (-) 453 WP_124006799.1 50S ribosomal protein L9 -
  C7K43_RS10465 (C7K43_10485) - 2188399..2189853 (-) 1455 WP_124006800.1 DHH family phosphoesterase -
  C7K43_RS10470 (C7K43_10490) rpsR 2190045..2190284 (-) 240 WP_124006801.1 30S ribosomal protein S18 -
  C7K43_RS10475 (C7K43_10495) ssb 2190308..2190811 (-) 504 WP_124006802.1 single-stranded DNA-binding protein Machinery gene
  C7K43_RS10480 (C7K43_10500) rpsF 2190853..2191152 (-) 300 WP_124006803.1 30S ribosomal protein S6 -
  C7K43_RS10485 (C7K43_10505) gyrA 2191378..2193849 (-) 2472 WP_371859805.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18477.07 Da        Isoelectric Point: 4.6229

>NTDB_id=280658 C7K43_RS10475 WP_124006802.1 2190308..2190811(-) (ssb) [Tetragenococcus koreensis strain KCTC 3924]
MINNVVLVGRLTKDPDLRYTANGVGVATFTLAVNRTFTNQNGEREADFINCVIWRKAAENLANLGRKGALIGATGRIQTR
NYENQQGQRVFITEVVADNFQLLEPRSVSEQRRSSDNDNSGGNQSNFGNSQNQRQTSQTSETPNFDRDNSDPFGGSSIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=280658 C7K43_RS10475 WP_124006802.1 2190308..2190811(-) (ssb) [Tetragenococcus koreensis strain KCTC 3924]
TTGATTAACAACGTTGTACTAGTAGGAAGATTGACAAAAGACCCTGATTTACGTTATACCGCTAATGGAGTAGGAGTTGC
AACTTTTACTTTAGCTGTGAATCGTACATTTACGAATCAAAACGGCGAAAGAGAAGCAGATTTTATTAACTGCGTTATCT
GGAGAAAAGCAGCGGAAAATCTCGCAAATTTGGGACGTAAAGGTGCACTAATCGGCGCTACTGGAAGAATTCAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTTTTTATAACCGAAGTTGTAGCAGATAATTTCCAACTGTTGGAACCTCGTTC
TGTTAGTGAACAACGTCGTTCTTCTGACAATGATAATTCCGGTGGCAATCAATCGAACTTTGGGAACAGCCAGAATCAAA
GACAAACATCTCAAACTTCTGAAACACCTAATTTCGATCGTGATAACTCCGATCCTTTCGGTGGTTCATCGATTGACATT
TCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.303

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

63.473

0.377

Multiple sequence alignment