Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C7K38_RS04385 Genome accession   NZ_CP027783
Coordinates   923959..924459 (-) Length   166 a.a.
NCBI ID   WP_123935013.1    Uniprot ID   A0AA37XMD3
Organism   Tetragenococcus osmophilus strain JCM 31126     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 918959..929459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K38_RS04365 (C7K38_04350) rplI 919755..920207 (-) 453 WP_123935007.1 50S ribosomal protein L9 -
  C7K38_RS04370 (C7K38_04355) - 920217..921671 (-) 1455 WP_123935009.1 DHH family phosphoesterase -
  C7K38_RS04375 (C7K38_04360) ltrA 921890..923170 (-) 1281 WP_123933691.1 group II intron reverse transcriptase/maturase -
  C7K38_RS04380 (C7K38_04365) rpsR 923695..923934 (-) 240 WP_123935011.1 30S ribosomal protein S18 -
  C7K38_RS04385 (C7K38_04370) ssbA 923959..924459 (-) 501 WP_123935013.1 single-stranded DNA-binding protein Machinery gene
  C7K38_RS04390 (C7K38_04375) rpsF 924500..924799 (-) 300 WP_123935015.1 30S ribosomal protein S6 -
  C7K38_RS04395 (C7K38_04380) gyrA 925039..927453 (-) 2415 WP_265415561.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18319.94 Da        Isoelectric Point: 4.5093

>NTDB_id=280611 C7K38_RS04385 WP_123935013.1 923959..924459(-) (ssbA) [Tetragenococcus osmophilus strain JCM 31126]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAVNRTFTNQNGEREADFINCVIWRKAAENLANLGRKGALIGATGRIQTR
NYENQQGQRVFVTEVVAENFQLLEPRSVTEQRRSSDGNSGGNQPNFGDNYNQNQASQSSETPNFDRDNSDPFGGSSIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=280611 C7K38_RS04385 WP_123935013.1 923959..924459(-) (ssbA) [Tetragenococcus osmophilus strain JCM 31126]
TTGATTAATAATGTTGTACTAGTAGGAAGATTGACAAAAGACCCTGATTTACGTTATACCGCAAATGGGGTAGCAGTTGC
GACTTTTACATTAGCGGTGAATCGTACGTTTACAAACCAAAATGGTGAAAGAGAAGCAGATTTTATTAACTGCGTGATCT
GGCGAAAAGCGGCAGAAAACCTTGCTAATTTGGGGCGTAAAGGTGCATTAATTGGTGCTACTGGAAGAATTCAAACAAGA
AATTATGAAAACCAGCAAGGACAACGTGTTTTTGTGACTGAAGTCGTAGCAGAAAATTTCCAACTATTAGAACCACGCTC
TGTTACTGAGCAACGTCGTTCTTCTGATGGTAATTCTGGTGGCAATCAACCGAACTTTGGAGACAATTACAATCAAAATC
AAGCATCTCAGTCTTCTGAAACACCTAATTTTGATCGTGATAACAGTGATCCTTTCGGTGGATCTTCGATCGATATTTCA
GATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.674

100

0.651
  ssb Latilactobacillus sakei subsp. sakei 23K

61.404

100

0.633
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.855

0.386

Multiple sequence alignment