Detailed information NTG0280551

Bioinformatically predicted

Overview

• Name: uvrB
• Type: Machinery gene
• Locus tag: D4L20_RS06310
• Genome accession: NZ_CP032899
• Coordinates: 1304029..1306005 (-)
• Length: 658 a.a.
• NCBI ID: WP_139550113.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 478-A-EK1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1299029..1311005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L20_RS06285	-	1299107..1299499 (+)	393	WP_000656174.1	4Fe-4S dicluster-binding protein	-
D4L20_RS06290	-	1299509..1300732 (+)	1224	WP_000124341.1	2-oxoacid:ferredoxin oxidoreductase subunit alpha	-
D4L20_RS06295	-	1300745..1301689 (+)	945	WP_000238170.1	thiamine pyrophosphate-dependent enzyme	-
D4L20_RS06300	purB	1301799..1303121 (+)	1323	WP_139549875.1	adenylosuccinate lyase	-
D4L20_RS06305	-	1303185..1304018 (+)	834	WP_139549876.1	outer membrane protein	-
D4L20_RS06310	uvrB	1304029..1306005 (-)	1977	WP_139550113.1	excinuclease ABC subunit UvrB	Machinery gene
D4L20_RS06315	-	1306046..1306692 (-)	647	Protein_1202	DUF1542 domain-containing protein	-
D4L20_RS06320	-	1306707..1309428 (-)	2722	Protein_1203	DUF3519 domain-containing protein	-
D4L20_RS08295	-	1309415..1309615 (+)	201	Protein_1204	hypothetical protein	-
D4L20_RS06330	-	1309853..1310623 (-)	771	WP_139549879.1	HP1117 family Sel1-like repeat protein	-

Sequence

Protein

• Length: 658 a.a.
• Molecular weight: 75942.41 Da
• Isoelectric Point: 6.7308

>NTDB_id=280551 D4L20_RS06310 WP_139550113.1 1304029..1306005(-) (uvrB) [Helicobacter pylori strain 478-A-EK1]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKRAYKGFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAQLRTL

Nucleotide

• Length: 1977 bp

>NTDB_id=280551 D4L20_RS06310 WP_139550113.1 1304029..1306005(-) (uvrB) [Helicobacter pylori strain 478-A-EK1]
ATGCCTTTATTTGATTTAAAAAGCCCTTACCCACCAGCAGGCGATCAGCCCCAAGCCATAGAGGCCTTAACGAAAAGCTT
GAAAAATAACAACCATTATCAAACTTTAGTGGGGGTTACAGGGAGTGGTAAGACTTATACGATGGCCAATATCATCGCTC
AAACCAATAAACCCGCTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTTTATAGCGAGTTTAAGGCGTTTTTC
CCTCATAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAAAGCTATATCCCTAGAAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAACGATGATTTGGAGCGTTTGAGATTGAGCGCGACAACCTCACTTTTAGGTTATGATG
ATGTGATTGTGATAGCGAGCGTTTCGGCCAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCGCGCTTACAAGGGCTTTTTGTTAAAGCTAGTGGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACGGGGGAGTGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCGGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCCTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGTGAGAGGTTGAATTTAGCCATTAAAAGCATTGAAGATGAACTCGC
TTTAAGGTTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCGACCGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTCACCGGTAAAGCCCCTAACGAAACG
CCTTTTTGTTTGTTTGATTATTTAGGGATATTTGAGCGGGAGTTTTTAGTCATTGTAGATGAAAGCCATGTGAGTTTGCC
GCAGTTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATACGGCTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAATTAGAGCTTTCCAAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTGTTTGATGAAATCAAGTTAGTGGTAGCTAGAGATGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCTGAATGGGGCTTGAAAGCGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGAAATCACATCATCCGCTCTTTAAGGCTTAAGGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAAGGGCTGGATTTGCCTGAAGTCTCTTTAGTAGCGATCATGGATGCAGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGTCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATCACTAGTTACAGGCGCGCCAAGCAAGAAGAGTTCAATAAGCTTCATAACATCAC
CCCTAAAACCGTTACTCGCGCTTTAGAAGAGGAATTGAAATTAAGAGACGATGAGATTAGAATCGCTAAAGCCTTAAAAA
AGGACAAAATGCCTAAAAGCGAAAGGGAAAAAATCATTAAAGAATTGGATAAAAAAATGCGAGAGTGTGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGACGAAATCGCTCAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

• Ultra-violet resistance protein B (UvrB) (554-595)

• Type III restriction enzyme, res subunit (ResIII) (15-137)

• UvrB/uvrC motif (UVR) (623-657)

• Helicase conserved C-terminal domain (Helicase_C) (445-547)

• UvrB interaction domain (UvrB_inter) (160-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrB	Streptococcus pneumoniae R6	49.472	100	0.498
uvrB	Streptococcus pneumoniae D39	49.472	100	0.498
uvrB	Streptococcus pneumoniae TIGR4	49.472	100	0.498