Detailed information NTG0280496

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: C4F17_RS23845
• Genome accession: NZ_CP027773
• Coordinates: 5105284..5106567 (-)
• Length: 427 a.a.
• NCBI ID: WP_106936897.1
• Uniprot ID: A0AA92RCJ5
• Organism: Variovorax sp. PMC12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5100284..5111567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4F17_RS23820 (C4F17_23820)	-	5100802..5101266 (-)	465	WP_106936893.1	Mpo1-like protein	-
C4F17_RS23825 (C4F17_23825)	-	5101452..5102177 (+)	726	WP_106936894.1	response regulator transcription factor	-
C4F17_RS23830 (C4F17_23830)	-	5102224..5103990 (+)	1767	WP_106937681.1	hybrid sensor histidine kinase/response regulator	-
C4F17_RS23840 (C4F17_23840)	-	5104185..5105189 (+)	1005	WP_159053692.1	hypothetical protein	-
C4F17_RS23845 (C4F17_23845)	pilA	5105284..5106567 (-)	1284	WP_106936897.1	signal recognition particle-docking protein FtsY	Machinery gene
C4F17_RS23850 (C4F17_23850)	-	5106597..5108045 (+)	1449	WP_106936898.1	pitrilysin family protein	-
C4F17_RS23855 (C4F17_23855)	-	5108126..5109442 (+)	1317	WP_234382966.1	pitrilysin family protein	-
C4F17_RS23860 (C4F17_23860)	-	5109448..5110362 (-)	915	WP_106936900.1	LysR family transcriptional regulator ArgP	-
C4F17_RS23865 (C4F17_23865)	-	5110441..5111076 (+)	636	WP_106936901.1	LysE/ArgO family amino acid transporter	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 43784.66 Da
• Isoelectric Point: 5.8742

>NTDB_id=280496 C4F17_RS23845 WP_106936897.1 5105284..5106567(-) (pilA) [Variovorax sp. PMC12]
MFSFFKKKPPADAPVAPAPPPAAAPAPAPEPAPTRSVFSPSSWFGSKPAAEEAPAVPAPAPAPAPTPAPAPAPAPAPAAP
APVVAAPAPAPVVAAPPAALAPVFAPAPAPAPAPVPAPSPVASAPAVPERKSWLDKLKTGLRKTGTGIQAVFVNAQIDDA
LYEELESALLMADTGVKATEYLLEDLRGRVKRQMATDAAQVKVLLAEAIADLLKPLEKPLVIGQFTPTVIMVAGVNGAGK
TTSIGKLTKHLATEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSNEGGDPSAVSFDAVNAGKARGKDVVLVDTAGRL
PTQLHLMDELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLIVTKLDGTAKGGVLCAIARDRPIP
VYFIGVGEKLEDLETFDAREFAQALLG

Nucleotide

• Length: 1284 bp

>NTDB_id=280496 C4F17_RS23845 WP_106936897.1 5105284..5106567(-) (pilA) [Variovorax sp. PMC12]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGATGCCCCGGTCGCGCCGGCGCCCCCTCCGGCCGCCGCGCCAGCGCC
CGCCCCGGAGCCCGCGCCCACGCGCTCGGTGTTCTCGCCTTCGAGCTGGTTCGGCTCGAAGCCTGCGGCGGAGGAAGCGC
CTGCCGTGCCTGCGCCTGCGCCGGCCCCTGCTCCAACGCCCGCTCCGGCACCAGCACCTGCACCGGCACCGGCCGCCCCT
GCGCCGGTCGTCGCGGCGCCGGCGCCAGCCCCGGTGGTGGCCGCTCCGCCTGCGGCACTGGCGCCCGTCTTCGCTCCCGC
GCCAGCTCCGGCGCCTGCCCCCGTCCCGGCTCCCTCCCCGGTCGCCTCGGCGCCGGCGGTCCCCGAGCGCAAGAGCTGGC
TCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCCAGGCCGTCTTCGTCAACGCCCAGATCGACGACGCA
CTCTATGAAGAGCTCGAGTCCGCCCTGCTGATGGCCGACACCGGCGTCAAGGCGACCGAGTACCTGCTCGAAGACCTGCG
CGGCCGCGTCAAGCGCCAGATGGCCACCGACGCGGCCCAGGTCAAGGTCCTGCTGGCCGAGGCGATCGCCGACCTGCTCA
AGCCGCTGGAGAAGCCGCTGGTCATCGGCCAGTTCACGCCCACCGTCATCATGGTGGCCGGCGTCAACGGCGCGGGCAAG
ACCACGTCCATCGGCAAGCTCACCAAGCACCTGGCCACCGAAGGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCG
GGCTGCCGCACGCGAGCAATTGCTGGTCTGGGCCGACCGCAACACGGTCGAGATCGTGAGCAACGAGGGCGGCGACCCCT
CCGCCGTGAGCTTCGACGCGGTGAATGCCGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTCGACACGGCCGGCCGCCTG
CCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTCACCAAGGCCGACGCCACGGCGCCGCACGA
GGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTTGCGCAGGTCAAGGCATTCGACGAGACGCTGGGCCTCA
CGGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGTGCGCCATTGCGCGCGATAGGCCGATCCCG
GTGTACTTCATCGGCGTAGGCGAGAAGCTGGAAGACCTGGAGACCTTCGACGCGCGCGAGTTCGCGCAGGCGCTGCTCGG
CTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (227-427)

• SRP54-type protein, helical bundle domain (SRP54_N) (145-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.618	100	0.494