Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4F17_RS23090 Genome accession   NZ_CP027773
Coordinates   4948363..4948761 (+) Length   132 a.a.
NCBI ID   WP_081271091.1    Uniprot ID   -
Organism   Variovorax sp. PMC12     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4943363..4953761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4F17_RS23065 (C4F17_23065) purH 4943611..4945218 (+) 1608 WP_106936798.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  C4F17_RS23070 (C4F17_23070) - 4945250..4945732 (-) 483 WP_106936799.1 hypothetical protein -
  C4F17_RS23075 (C4F17_23075) hemL 4945736..4947016 (-) 1281 WP_106936800.1 glutamate-1-semialdehyde 2,1-aminomutase -
  C4F17_RS23080 (C4F17_23080) - 4947034..4947996 (-) 963 WP_106936801.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C4F17_RS23085 (C4F17_23085) - 4948108..4948278 (+) 171 WP_007838397.1 rubredoxin -
  C4F17_RS23090 (C4F17_23090) pilG 4948363..4948761 (+) 399 WP_081271091.1 response regulator Regulator
  C4F17_RS23095 (C4F17_23095) - 4948761..4949126 (+) 366 WP_081271090.1 response regulator -
  C4F17_RS23100 (C4F17_23100) - 4949146..4949679 (+) 534 WP_081271089.1 chemotaxis protein CheW -
  C4F17_RS23105 (C4F17_23105) - 4949722..4952028 (+) 2307 WP_106936802.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14678.82 Da        Isoelectric Point: 7.3215

>NTDB_id=280495 C4F17_RS23090 WP_081271091.1 4948363..4948761(+) (pilG) [Variovorax sp. PMC12]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=280495 C4F17_RS23090 WP_081271091.1 4948363..4948761(+) (pilG) [Variovorax sp. PMC12]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGCGGGCACGAGGTTCTTCTCGCGGAAGACGGTTTCGATGCGCTCTCCAAGGTTAACGACCACAAGCCGCACC
TGATTTTCTGCGACATCCTGATGCCGCGGCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCTCATTTCTCC
AACGTCCCCGTCGTCATGCTGTCTTCGAAAGACGGTGTATTCGACAAGGCGCGCGGCCGCATGGTCGGCTCCCAGGACTA
CCTGACCAAGCCATTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGCGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment