Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C7J90_RS09260 Genome accession   NZ_CP027770
Coordinates   1982336..1982659 (-) Length   107 a.a.
NCBI ID   WP_103210245.1    Uniprot ID   A0AAQ0KQL1
Organism   Staphylococcus felis strain ATCC 49168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1977336..1987659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J90_RS09230 (C7J90_09230) gcvPA 1977939..1979288 (-) 1350 WP_103210235.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  C7J90_RS09235 (C7J90_09235) gcvT 1979301..1980392 (-) 1092 WP_103210237.1 glycine cleavage system aminomethyltransferase GcvT -
  C7J90_RS09240 (C7J90_09240) - 1980548..1981072 (-) 525 WP_103210239.1 shikimate kinase -
  C7J90_RS12255 (C7J90_09250) - 1981234..1981719 (-) 486 WP_103210243.1 competence type IV pilus minor pilin ComGF -
  C7J90_RS09255 (C7J90_09255) comGD 1981912..1982346 (-) 435 WP_232332062.1 competence type IV pilus minor pilin ComGD -
  C7J90_RS09260 (C7J90_09260) comGC 1982336..1982659 (-) 324 WP_103210245.1 competence type IV pilus major pilin ComGC Machinery gene
  C7J90_RS09265 (C7J90_09265) comGB 1982672..1983739 (-) 1068 WP_103210247.1 competence type IV pilus assembly protein ComGB -
  C7J90_RS09270 (C7J90_09270) comGA 1983708..1984682 (-) 975 WP_103210249.1 competence type IV pilus ATPase ComGA Machinery gene
  C7J90_RS09275 (C7J90_09275) - 1984746..1985369 (-) 624 WP_103210250.1 MBL fold metallo-hydrolase -
  C7J90_RS09280 (C7J90_09280) - 1985392..1985703 (-) 312 WP_103210252.1 MTH1187 family thiamine-binding protein -
  C7J90_RS09285 (C7J90_09285) - 1985709..1986689 (-) 981 WP_103210254.1 ROK family glucokinase -
  C7J90_RS09290 (C7J90_09290) - 1986686..1986889 (-) 204 WP_103210261.1 YqgQ family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11939.05 Da        Isoelectric Point: 9.7798

>NTDB_id=280409 C7J90_RS09260 WP_103210245.1 1982336..1982659(-) (comGC) [Staphylococcus felis strain ATCC 49168]
MKSFWKNKIQNNKAFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCNAQLKLVDSQIEAYTLKYNTKPSSIEELVR
EGYIKENQKSCKSGETISISGGKAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=280409 C7J90_RS09260 WP_103210245.1 1982336..1982659(-) (comGC) [Staphylococcus felis strain ATCC 49168]
ATGAAAAGTTTTTGGAAAAATAAAATCCAAAATAACAAAGCGTTTACACTCATTGAAATGTTATTAGTACTATTAATTAT
TAGTGTCTTATTAATTCTTATCATACCTAATATTGCCAAACAATCTGAACACATTCAAAAAACAGGTTGTAATGCACAGC
TTAAACTTGTCGATAGTCAAATAGAGGCATATACATTAAAATATAACACTAAACCAAGTTCAATTGAAGAATTAGTAAGA
GAAGGCTATATAAAAGAAAATCAAAAATCATGTAAGTCCGGTGAAACTATATCAATCTCAGGCGGAAAAGCTGTTGCGTC
ATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

75.789

88.785

0.673
  comGC Staphylococcus aureus N315

75.789

88.785

0.673
  comGC/cglC Streptococcus mitis SK321

46.667

84.112

0.393
  comGC Bacillus subtilis subsp. subtilis str. 168

43.011

86.916

0.374
  comGC/cglC Streptococcus mitis NCTC 12261

51.316

71.028

0.364

Multiple sequence alignment