Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C7J90_RS02705 Genome accession   NZ_CP027770
Coordinates   549783..550286 (-) Length   167 a.a.
NCBI ID   WP_103207848.1    Uniprot ID   A0A2K3ZHH0
Organism   Staphylococcus felis strain ATCC 49168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 544783..555286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J90_RS02675 (C7J90_02675) - 545389..545691 (-) 303 WP_103207839.1 PadR family transcriptional regulator -
  C7J90_RS02680 (C7J90_02680) - 545827..546204 (+) 378 WP_103207841.1 DUF1801 domain-containing protein -
  C7J90_RS02685 (C7J90_02685) - 546477..547493 (+) 1017 WP_103207842.1 ATP-binding cassette domain-containing protein -
  C7J90_RS02690 (C7J90_02690) - 547495..548154 (+) 660 WP_103207844.1 methionine ABC transporter permease -
  C7J90_RS02695 (C7J90_02695) gmpC 548170..549012 (+) 843 WP_103207846.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  C7J90_RS02700 (C7J90_02700) rpsR 549496..549738 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  C7J90_RS02705 (C7J90_02705) ssbA 549783..550286 (-) 504 WP_103207848.1 single-stranded DNA-binding protein Machinery gene
  C7J90_RS02710 (C7J90_02710) rpsF 550310..550606 (-) 297 WP_103207850.1 30S ribosomal protein S6 -
  C7J90_RS02715 (C7J90_02715) - 551087..552619 (+) 1533 WP_103207852.1 B domain-containing protein -
  C7J90_RS02720 (C7J90_02720) - 552829..553467 (+) 639 WP_103207854.1 NAD(P)H-binding protein -
  C7J90_RS02725 (C7J90_02725) ltrA 553550..554836 (-) 1287 WP_106465077.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18660.30 Da        Isoelectric Point: 4.9305

>NTDB_id=280396 C7J90_RS02705 WP_103207848.1 549783..550286(-) (ssbA) [Staphylococcus felis strain ATCC 49168]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHANNPGNDFQSYEQSFGGQQQGQNSSYQNNNQSSHNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=280396 C7J90_RS02705 WP_103207848.1 549783..550286(-) (ssbA) [Staphylococcus felis strain ATCC 49168]
ATGCTTAACAGAGTCGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTTGC
GACTTTTACCTTAGCGGTTAATCGTACGTTTACGAATGCCCAAGGGGAACGTGAAGCGGACTTCATCAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAACGTAAGTAACTTCTTATTTAAAGGAAGTCTTGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTCACAGAAGTTGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAGCGTCATGCCAATAACCCAGGAAATGATTTCCAAAGTTATGAACAAAGTTTCGGTGGACAACAACAAGGCC
AAAATTCGTCATATCAAAACAACAATCAATCATCCCATAATGATAACCCATTTGCCAATGCGAATGGACCAATTGATATT
AGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3ZHH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.677
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

65.868

0.377

Multiple sequence alignment