Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C7H83_RS01865 Genome accession   NZ_CP027768
Coordinates   347891..348394 (+) Length   167 a.a.
NCBI ID   WP_103891901.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain LMG 26042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 342891..353394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H83_RS01855 (C7H83_01845) gyrA 344839..347304 (+) 2466 WP_103891900.1 DNA gyrase subunit A -
  C7H83_RS01860 (C7H83_01850) rpsF 347550..347849 (+) 300 WP_014123404.1 30S ribosomal protein S6 -
  C7H83_RS01865 (C7H83_01855) ssbA 347891..348394 (+) 504 WP_103891901.1 single-stranded DNA-binding protein Machinery gene
  C7H83_RS01870 (C7H83_01860) rpsR 348418..348657 (+) 240 WP_014123406.1 30S ribosomal protein S18 -
  C7H83_RS01875 (C7H83_01865) - 348850..350304 (+) 1455 WP_103891902.1 DHH family phosphoesterase -
  C7H83_RS01880 (C7H83_01870) rplI 350312..350764 (+) 453 WP_014123408.1 50S ribosomal protein L9 -
  C7H83_RS01885 (C7H83_01875) dnaB 350857..352224 (+) 1368 WP_014123409.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18437.09 Da        Isoelectric Point: 4.6109

>NTDB_id=280359 C7H83_RS01865 WP_103891901.1 347891..348394(+) (ssbA) [Tetragenococcus halophilus strain LMG 26042]
MINNVVLVGRLTKDPDLRYTSNGVAVATFTLAINRTFTNQNGEREADFINCVIWRKAAENLANLGRKGALIGATGRIQTR
NYENQQGQRVFVTEVVAENFQLLEPRSVSEQRRSADNNSGGGNQSNFGNSYNQTQTSQTPETPNFDRDNSDPFGGSSIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=280359 C7H83_RS01865 WP_103891901.1 347891..348394(+) (ssbA) [Tetragenococcus halophilus strain LMG 26042]
TTGATTAACAACGTTGTACTAGTAGGAAGATTGACAAAAGACCCTGATTTACGTTACACCTCTAATGGCGTAGCAGTTGC
TACTTTTACTTTAGCCATAAATCGTACATTTACGAATCAAAATGGTGAAAGAGAAGCGGATTTTATTAACTGTGTCATTT
GGAGAAAGGCTGCGGAAAATCTCGCAAATTTAGGACGTAAAGGCGCGTTAATTGGCGCCACTGGAAGAATTCAGACAAGA
AATTACGAAAATCAACAAGGACAACGTGTTTTTGTTACTGAAGTTGTGGCAGAAAATTTCCAATTATTGGAACCTCGTTC
TGTCAGTGAACAACGTCGTTCTGCTGATAATAACTCTGGCGGTGGCAATCAATCGAACTTTGGGAACAGTTATAATCAAA
CACAAACATCTCAAACTCCTGAAACACCTAATTTTGATCGTGACAACAGCGATCCTTTTGGCGGATCATCCATTGATATT
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.614

100

0.641
  ssb Latilactobacillus sakei subsp. sakei 23K

60.227

100

0.635
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.473

0.383

Multiple sequence alignment