Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J83_RS18155 Genome accession   NZ_CP027762
Coordinates   3920217..3922442 (-) Length   741 a.a.
NCBI ID   WP_124417835.1    Uniprot ID   -
Organism   Pseudomonas sp. LBUM920     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3915217..3927442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J83_RS18120 (C4J83_3589) murB 3915586..3916605 (-) 1020 WP_124417832.1 UDP-N-acetylmuramate dehydrogenase -
  C4J83_RS18125 (C4J83_3590) - 3916602..3917066 (-) 465 WP_124417833.1 low molecular weight protein-tyrosine-phosphatase -
  C4J83_RS18130 (C4J83_3591) kdsB 3917066..3917830 (-) 765 WP_106579829.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J83_RS18135 (C4J83_3592) - 3917827..3918012 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J83_RS18140 (C4J83_3593) lpxK 3918037..3919047 (-) 1011 WP_124417834.1 tetraacyldisaccharide 4'-kinase -
  C4J83_RS18145 (C4J83_3594) - 3919047..3919475 (-) 429 WP_106579831.1 biopolymer transporter ExbD -
  C4J83_RS18150 (C4J83_3595) exbB 3919472..3920107 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J83_RS18155 (C4J83_3596) comA 3920217..3922442 (-) 2226 WP_124417835.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J83_RS18160 (C4J83_3597) - 3922578..3923093 (+) 516 WP_106579834.1 DUF2062 domain-containing protein -
  C4J83_RS18165 (C4J83_3598) - 3923101..3924459 (-) 1359 WP_124418890.1 sensor histidine kinase -
  C4J83_RS18170 (C4J83_3599) - 3924446..3925171 (-) 726 WP_124417836.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79851.49 Da        Isoelectric Point: 10.3391

>NTDB_id=280317 C4J83_RS18155 WP_124417835.1 3920217..3922442(-) (comA) [Pseudomonas sp. LBUM920]
MKIGMFALGLGLLSLRLLPALPPTGWLLAICVIALMLLPFRTYPVAFFLFGLGWACLSAQWALDDRLKPALDGQTRWVEG
RVTGLAQQTSTGVRFELTDSRSRTARLPKRIRVSWHGGPPVNSGERWRLAITLKRPTGLLNFHGFDHEAWLLAQRIGATG
SVKDGQRLAPARNAWRDAVRQRLAAVDAQGREAGLAALVLGDGSGLAASDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARHGCWPRALPWLPWACGLAFAAALGYGLLAGSGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALDAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWSLWHAWTRPQWLIAIGLFPLLLVLGLPVSLSAPVANLFAVPWISLVVLPLAL
LGTALLAIPFVVESLLWLAGGALDGLFRALTLLASQQPAWIPAEVPLVYWWVSLAGAVLLLLPQGLPFRLLGWPMLLLAV
FPPRQPVPVGQVEVVQLDVGQGQALVLRTRHHTLLYDAGPRSGEFDLGARVVLPALKKLGVETLDLLVISHAHADHAGGA
AAVAQGLAVQRVIGGETQGLPALLDAQPCVSGEQWEWDGVAFELWQWPGATSSNPKSCVLGVSANGERLLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSSPLLEQLAPKSVLISRGRGNAFGHPHPQVLARYQALGSRVYDSAEQGAVRVQL
GAFQPPDVARSQRRFWRDALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=280317 C4J83_RS18155 WP_124417835.1 3920217..3922442(-) (comA) [Pseudomonas sp. LBUM920]
ATGAAAATCGGCATGTTTGCGCTCGGACTTGGCCTGCTTTCGTTGCGACTTTTGCCCGCACTGCCGCCTACCGGATGGTT
ACTGGCCATTTGTGTGATTGCATTGATGTTGTTGCCTTTTCGCACCTACCCGGTGGCCTTTTTCCTCTTCGGATTGGGCT
GGGCGTGCCTGAGCGCGCAGTGGGCGCTGGACGACCGTCTGAAGCCGGCGCTGGATGGCCAGACGCGCTGGGTAGAAGGC
CGCGTGACCGGGTTGGCGCAGCAGACGAGCACCGGCGTACGGTTTGAACTGACCGACAGTCGGTCACGCACAGCCCGCTT
ACCCAAGCGCATTCGGGTGTCCTGGCACGGTGGCCCGCCAGTCAACAGCGGTGAGCGTTGGCGCCTGGCGATCACGTTGA
AGCGGCCAACGGGGCTGCTCAACTTTCACGGTTTTGACCACGAAGCCTGGCTCCTGGCCCAACGTATCGGGGCCACGGGA
TCGGTCAAGGACGGCCAGCGCCTGGCGCCAGCCCGCAATGCCTGGCGCGATGCTGTCCGGCAACGCTTGGCGGCGGTGGA
CGCCCAAGGGCGCGAGGCGGGTTTGGCGGCGTTGGTATTGGGCGATGGCTCTGGGCTGGCTGCCAGCGACTGGCAGGTAT
TGCAGGACACCGGAACCGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCTTGCTGGCGGGGTTGATCTACGGTCTG
GTGGCCGGGCTCGCCCGCCACGGCTGTTGGCCTCGAGCCTTGCCGTGGCTGCCATGGGCGTGTGGCCTGGCGTTTGCCGC
CGCGCTGGGATACGGCCTGTTGGCTGGGTCTGGTGTGCCGGTACAACGGGCCTGTGTGATGGTTGGCCTGGTATTGCTGT
GGCGTTTGCGCTTCCGGCATTTGGGGATCTGGTGGCCGCTGTTGTTGGCGCTCGACGCTGTGCTGGTGCTGGAACCGTTG
GCGAGTTTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCCGTCGCGGTGCTGGTACTGGCCTTCAGCGGGCGCTTGGGTCC
ATGGAGTCTTTGGCACGCATGGACGCGTCCACAGTGGTTGATTGCCATCGGTTTATTTCCGTTACTGCTGGTGCTGGGCC
TGCCTGTAAGCCTGAGCGCGCCAGTGGCGAATCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTATTGCCATTGGCGCTG
CTGGGGACTGCGCTGCTGGCGATTCCGTTTGTGGTTGAAAGCTTGCTGTGGCTGGCCGGCGGCGCACTCGATGGGCTTTT
CAGGGCCCTGACGCTGCTGGCGAGCCAGCAGCCGGCCTGGATACCGGCCGAGGTGCCCCTGGTGTATTGGTGGGTAAGCC
TGGCGGGCGCGGTGTTGTTGCTGCTGCCCCAAGGCCTGCCGTTTCGGCTGCTGGGCTGGCCAATGCTGCTGCTGGCGGTC
TTTCCACCCAGGCAGCCCGTGCCTGTTGGGCAGGTTGAAGTGGTGCAGTTGGATGTCGGCCAGGGACAGGCGCTGGTCCT
GCGCACGCGTCATCACACCTTGCTTTACGATGCGGGGCCGCGTTCCGGCGAGTTTGATCTTGGCGCGCGTGTGGTGCTGC
CCGCGTTGAAAAAGCTCGGGGTCGAGACCTTGGACCTGTTGGTGATCAGCCATGCTCACGCGGACCACGCGGGCGGTGCG
GCAGCAGTTGCCCAAGGGCTTGCAGTCCAGCGGGTAATCGGAGGAGAAACCCAAGGCTTGCCGGCATTGCTCGATGCCCA
ACCCTGTGTCAGTGGCGAGCAATGGGAGTGGGACGGTGTGGCGTTTGAACTGTGGCAGTGGCCTGGCGCCACTAGCAGCA
ATCCGAAATCCTGTGTATTGGGTGTAAGCGCCAACGGCGAACGCCTGCTGTTGACCGGCGATATTGACCGCGCTGCCGAA
AGGGCCTTCCTCGCGTCCCCCCTGGCGGTACGGACCGATTGGCTGCAGGCGCCGCATCATGGCAGTCGCAGTTCTTCATC
CTCGCCCTTGCTGGAACAACTTGCGCCCAAATCGGTCCTGATCTCACGGGGGCGTGGCAACGCGTTCGGTCATCCGCACC
CGCAAGTGCTGGCGCGTTATCAGGCGTTGGGCAGTCGCGTGTACGACAGCGCCGAGCAAGGCGCCGTGCGGGTGCAATTG
GGCGCCTTTCAACCACCTGATGTTGCTCGCAGTCAACGCCGCTTCTGGCGTGACGCGTTACCCTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-460)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.031

0.576
  comA Ralstonia pseudosolanacearum GMI1000

36.422

100

0.382

Multiple sequence alignment