Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J83_RS18150 Genome accession   NZ_CP027762
Coordinates   3919472..3920107 (-) Length   211 a.a.
NCBI ID   WP_106579832.1    Uniprot ID   A0A7M1KNP4
Organism   Pseudomonas sp. LBUM920     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3914472..3925107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J83_RS18115 (C4J83_3588) - 3914852..3915523 (+) 672 WP_124417831.1 Bax inhibitor-1/YccA family protein -
  C4J83_RS18120 (C4J83_3589) murB 3915586..3916605 (-) 1020 WP_124417832.1 UDP-N-acetylmuramate dehydrogenase -
  C4J83_RS18125 (C4J83_3590) - 3916602..3917066 (-) 465 WP_124417833.1 low molecular weight protein-tyrosine-phosphatase -
  C4J83_RS18130 (C4J83_3591) kdsB 3917066..3917830 (-) 765 WP_106579829.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J83_RS18135 (C4J83_3592) - 3917827..3918012 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J83_RS18140 (C4J83_3593) lpxK 3918037..3919047 (-) 1011 WP_124417834.1 tetraacyldisaccharide 4'-kinase -
  C4J83_RS18145 (C4J83_3594) - 3919047..3919475 (-) 429 WP_106579831.1 biopolymer transporter ExbD -
  C4J83_RS18150 (C4J83_3595) exbB 3919472..3920107 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J83_RS18155 (C4J83_3596) comA 3920217..3922442 (-) 2226 WP_124417835.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J83_RS18160 (C4J83_3597) - 3922578..3923093 (+) 516 WP_106579834.1 DUF2062 domain-containing protein -
  C4J83_RS18165 (C4J83_3598) - 3923101..3924459 (-) 1359 WP_124418890.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8768

>NTDB_id=280316 C4J83_RS18150 WP_106579832.1 3919472..3920107(-) (exbB) [Pseudomonas sp. LBUM920]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280316 C4J83_RS18150 WP_106579832.1 3919472..3920107(-) (exbB) [Pseudomonas sp. LBUM920]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCATCACGCCCGAGCATTTGCTGGGGCAGGTGTGGGGCTGGATCAAAAACA
AGCAACTGGATAAAGACAAACTCAAGGAATTGCGCGCCAACTCCCCTCTGGGTGAAATCCTGGCTGCCGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATTGAGGAAGCCGCCGCCCGGGTCATCCACGAGATGGAGCGCTATAT
CAATGCGCTCGGCACCATCGCGGCCATGGCGCCATTGCTCGGCCTGCTGGGGACGGTGTTGGGCATGATTGATATTTTCA
GCTCGTTCATGGGCTCAGGCATGACCACCAATGCCGCGGTATTGGCAGGCGGTATCTCCAAGGCCTTGATTACAACGGCT
GCGGGTCTGATGGTCGGTATTCCTTCGGTGTTTTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTCGTCGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTCGAGGGCCGGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KNP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834

Multiple sequence alignment