Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   D9C08_RS19140 Genome accession   NZ_CP032872
Coordinates   3570869..3571873 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 3565869..3576873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS19115 (D9C08_19115) acuA 3566796..3567428 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  D9C08_RS19120 (D9C08_19120) acuB 3567455..3568099 (+) 645 WP_014480568.1 acetoin utilization AcuB family protein -
  D9C08_RS19125 (D9C08_19125) acuC 3568096..3569259 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  D9C08_RS19130 (D9C08_19130) motS 3569270..3569998 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  D9C08_RS19135 (D9C08_19135) motP 3569988..3570806 (-) 819 WP_004398692.1 flagellar motor protein MotP -
  D9C08_RS19140 (D9C08_19140) ccpA 3570869..3571873 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  D9C08_RS19145 (D9C08_19145) aroX 3572149..3573225 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  D9C08_RS19150 (D9C08_19150) ytxJ 3573462..3573788 (-) 327 WP_014480571.1 bacillithiol system redox-active protein YtxJ -
  D9C08_RS19155 (D9C08_19155) ytxH 3573812..3574267 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  D9C08_RS19160 (D9C08_19160) ytxG 3574298..3574720 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  D9C08_RS19165 (D9C08_19165) murC 3574882..3576180 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=280293 D9C08_RS19140 WP_003229285.1 3570869..3571873(-) (ccpA) [Bacillus subtilis subsp. subtilis strain 2KL1]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=280293 D9C08_RS19140 WP_003229285.1 3570869..3571873(-) (ccpA) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment