Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J84_RS14835 Genome accession   NZ_CP027761
Coordinates   3254672..3256897 (-) Length   741 a.a.
NCBI ID   WP_124371044.1    Uniprot ID   -
Organism   Pseudomonas sp. R11-23-07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3249672..3261897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J84_RS14800 (C4J84_2941) murB 3250041..3251060 (-) 1020 WP_124435622.1 UDP-N-acetylmuramate dehydrogenase -
  C4J84_RS14805 (C4J84_2942) - 3251057..3251521 (-) 465 WP_124435623.1 low molecular weight protein-tyrosine-phosphatase -
  C4J84_RS14810 (C4J84_2943) kdsB 3251521..3252285 (-) 765 WP_124363254.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J84_RS14815 (C4J84_2944) - 3252282..3252467 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J84_RS14820 (C4J84_2945) lpxK 3252492..3253502 (-) 1011 WP_124435624.1 tetraacyldisaccharide 4'-kinase -
  C4J84_RS14825 (C4J84_2946) - 3253502..3253930 (-) 429 WP_124363256.1 biopolymer transporter ExbD -
  C4J84_RS14830 (C4J84_2947) exbB 3253927..3254562 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J84_RS14835 (C4J84_2948) comA 3254672..3256897 (-) 2226 WP_124371044.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J84_RS14840 (C4J84_2949) - 3257033..3257548 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J84_RS14845 (C4J84_2950) - 3257552..3258910 (-) 1359 WP_124371045.1 sensor histidine kinase -
  C4J84_RS14850 (C4J84_2951) - 3258897..3259625 (-) 729 WP_124371046.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80631.72 Da        Isoelectric Point: 10.9112

>NTDB_id=280293 C4J84_RS14835 WP_124371044.1 3254672..3256897(-) (comA) [Pseudomonas sp. R11-23-07]
MRTGMFALALGLLTLRFLPVLPPTGWLLAMLVLALMLVPFRTYPLAFFLLGLSWACISAQWALDDRLRPTLDGETRWVEG
RVIGLPQQTDTGVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRTEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFMAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWFKGLTLLAGQLPAWTLAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQALILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAIARGLPIRRVVGGETDGLPAFLGTEPCISGERWEWDGVSFVLWQWSGAISGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFHPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=280293 C4J84_RS14835 WP_124371044.1 3254672..3256897(-) (comA) [Pseudomonas sp. R11-23-07]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGCTGCTGACCCTGCGTTTTCTACCGGTGTTGCCGCCCACCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTAGTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAACACTGGACGGCGAAACGCGATGGGTGGAAGGG
CGCGTGATCGGCTTGCCTCAGCAGACCGACACCGGCGTGCGTTTTGACCTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGCGGGCCGCCGGTGCGCAGTGGAGAACGCTGGCGCTTGGCTGTCACCCTCA
AGCGGCCGTCCGGCCTGCTCAATTTTCACGGTTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTGAAAGACGGTGAGCGCCTCGCGCCAGCCCGCAATGCCCTGCGCGACAGCCTGCGCCAGCGCCTGATGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTGCGCACGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTCATTTCCGGCCAACACATTGGTTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATGGC
AGCGCTGGGTTATGGACTGCTGGCGGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCTCTG
GCCAGTCTGCAGCCGGGTTTCTGGTTGTCCTTTGCAGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGACGGCTCGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCTCAGTGGCTGATTGCCATCGGTTTGTTTCCAGTCCTGCTGGTGCTGGGTT
TACCCATCAGCCTCACTGCGCCTGTGGCCAATTTATTCGCCGTGCCGTGGATCAGTCTGGTGGTGTTGCCTTTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTCTGGTTGGCCGGCGGAGCGCTGGAGGGATGGTT
CAAGGGGCTGACCCTGCTGGCGGGGCAGTTGCCGGCCTGGACGCTGGCTGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGTGTTATTGCTGTTGCCCAAGGGCGTGCCATTTCGGTTGCTGGGCTGGCCCATGCTGCTGTTGGCCGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTAACGGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCATTGATCTT
GCGCACCCGCAACCACGCCTTGCTTTACGACGCGGGGCCGCGTTCGGGGGCGGTCGACCTGGGCGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGCTGCTACTGAGCCATGCCGACGCCGATCATGCCGGTGGTGCT
GCAGCTATCGCCCGTGGGCTGCCCATCCGGCGCGTGGTTGGCGGTGAAACCGACGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTATCAGTGGCGAACGATGGGAGTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCCGGCGCCATCAGTGGCA
ACGCCAAATCCTGTGTATTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGGGATATCGACCGTGCGGCGGAG
CGCGCATTGCTTGACACACCGTTGGCGGTGCCCACCGATTGGCTGCAGGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCTTTTGTGCAACGGCTTGCGCCTGGATCGGTGCTGATCTCCAGAGGCCGGGGCAATGCCTTTGGTCATCCTCATT
CGCAAGTGGTAGAACGCTATCGGGCCCTGGGCAGCCGGCTATACGACAGCGCCGAGCAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCACCCCGCCGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.527

97.031

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.898

100

0.371

Multiple sequence alignment